UHGV-0187074

Genome information

Genome length 42,428 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187074
vOTU ID	vOTU-064988
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593873
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.78
Jumbo phage	No

Genome content
Genome length	42,428 bps
GC content	53.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.59%
Average CDS length	508.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187074_1	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0187074_1	PHROG	phrog_4433	NA	unknown function
UHGV-0187074_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0187074_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0187074_1	Structural annotation	NF007410	NA	NA
UHGV-0187074_2	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0187074_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187074_2	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0187074_4	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0187074_4	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0187074_4	Pfam	PF06378	NA	DUF1071
UHGV-0187074_4	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0187074_5	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0187074_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0187074_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0187074_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0187074_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0187074_6	Structural annotation	PF05772	NA	NA
UHGV-0187074_7	PHROG	phrog_7566	NA	unknown function
UHGV-0187074_7	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0187074_7	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0187074_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0187074_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187074_8	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0187074_8	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0187074_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0187074_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0187074_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0187074_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0187074_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0187074_10	PHROG	phrog_15768	NA	unknown function
UHGV-0187074_10	UniRef90	UniRef90_UPI0019563B2C	NA	NA
UHGV-0187074_10	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0187074_10	Pfam	PF19808	NA	DUF6291
UHGV-0187074_10	Structural annotation	PF19808	NA	NA
UHGV-0187074_11	Structural annotation	PF11417	NA	NA
UHGV-0187074_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187074_13	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0187074_13	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0187074_13	Pfam	PF06356	NA	DUF1064
UHGV-0187074_13	Structural annotation	PF06356	NA	NA
UHGV-0187074_14	eggNOG-mapper	500635.MITSMUL_03133	sulfate reduction	NA
UHGV-0187074_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0187074_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0187074_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0187074_16	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0187074_16	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0187074_16	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0187074_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0187074_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187074_18	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0187074_21	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0187074_24	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0187074_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0187074_26	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0187074_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0187074_26	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0187074_26	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0187074_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0187074_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187074_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0187074_26	COG	COG0863	DNA modification methylase	NA
UHGV-0187074_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0187074_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187074_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0187074_28	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0187074_28	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0187074_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0187074_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187074_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187074_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187074_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187074_29	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0187074_29	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0187074_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187074_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187074_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187074_30	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0187074_30	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0187074_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187074_30	COG	COG2369	NA	NA
UHGV-0187074_30	Structural annotation	PF06152	NA	NA
UHGV-0187074_32	Structural annotation	PF18152	NA	NA
UHGV-0187074_33	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0187074_33	Structural annotation	PF06810	NA	NA
UHGV-0187074_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0187074_34	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0187074_34	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0187074_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0187074_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187074_35	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0187074_36	PHROG	phrog_3366	NA	unknown function
UHGV-0187074_36	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0187074_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0187074_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187074_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0187074_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0187074_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0187074_37	Structural annotation	PF11114	NA	NA
UHGV-0187074_38	PHROG	phrog_3266	tail completion	connector
UHGV-0187074_38	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0187074_38	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0187074_38	Structural annotation	PF12691	NA	NA
UHGV-0187074_39	PHROG	phrog_3099	NA	unknown function
UHGV-0187074_39	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0187074_39	Structural annotation	TIGR02126	NA	NA
UHGV-0187074_40	PHROG	phrog_11299	NA	unknown function
UHGV-0187074_40	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0187074_40	Structural annotation	PF10666	NA	NA
UHGV-0187074_41	PHROG	phrog_706	NA	unknown function
UHGV-0187074_41	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0187074_41	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0187074_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187074_41	Structural annotation	PF06854	NA	NA
UHGV-0187074_42	PHROG	phrog_806	NA	unknown function
UHGV-0187074_42	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0187074_42	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0187074_42	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187074_42	Pfam	PF11611	NA	DUF4352
UHGV-0187074_42	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0187074_43	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0187074_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0187074_43	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0187074_43	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0187074_43	COG	COG1511	NA	NA
UHGV-0187074_43	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0187074_44	PHROG	phrog_1194	NA	unknown function
UHGV-0187074_44	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0187074_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0187074_45	PHROG	phrog_13879	NA	unknown function
UHGV-0187074_45	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0187074_45	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0187074_46	PHROG	phrog_18725	NA	unknown function
UHGV-0187074_46	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0187074_46	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0187074_48	PHROG	phrog_2295	NA	unknown function
UHGV-0187074_48	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0187074_48	Structural annotation	PF21722	NA	NA
UHGV-0187074_49	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0187074_49	Structural annotation	PF21722	NA	NA
UHGV-0187074_51	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0187074_51	Structural annotation	PF21722	NA	NA
UHGV-0187074_52	PHROG	phrog_2310	NA	unknown function
UHGV-0187074_52	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-0187074_54	PHROG	phrog_4105	NA	unknown function
UHGV-0187074_54	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0187074_54	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0187074_55	PHROG	phrog_881	holin	lysis
UHGV-0187074_55	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0187074_55	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0187074_55	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0187074_55	Structural annotation	PF16938	NA	NA
UHGV-0187074_56	PHROG	phrog_435	endolysin	lysis
UHGV-0187074_56	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0187074_56	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0187074_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0187074_56	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0187074_58	PHROG	phrog_3754	NA	unknown function
UHGV-0187074_58	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0187074_59	PHROG	phrog_21718	NA	unknown function
UHGV-0187074_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0187074_60	PHROG	phrog_22984	NA	unknown function
UHGV-0187074_61	PHROG	phrog_16490	NA	unknown function
UHGV-0187074_61	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0187074_62	PHROG	phrog_20016	NA	unknown function
UHGV-0187074_62	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0187074_62	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0187074_62	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187074_63	PHROG	phrog_28802	NA	unknown function
UHGV-0187074_63	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0187074_63	Structural annotation	PF12510	NA	NA
UHGV-0187074_64	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0187074_65	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0187074_65	PHROG	phrog_95	integrase	integration and excision
UHGV-0187074_65	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0187074_65	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0187074_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0187074_65	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0187074_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187074_65	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0187074_66	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0187074_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187074_66	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0187074_70	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187074_70	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0187074_71	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187074_71	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0187074_71	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0187074_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187074_71	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0187074_71	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0187074_74	PHROG	phrog_22529	NA	unknown function
UHGV-0187074_74	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0187074_74	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0187074_74	Pfam	PF06725	3D domain	3D
UHGV-0187074_74	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0187074_74	Structural annotation	COG3584	NA	NA
UHGV-0187074_76	PHROG	phrog_4433	NA	unknown function
UHGV-0187074_76	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0187074_76	COG	COG5164	Transcription elongation factor SPT5	NA