UHGV-0187093

Genome information

Genome length 43,147 bps

CDS count 55

Completeness 56.28% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187093
vOTU ID	vOTU-029675
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595125
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.28
Jumbo phage	No

Genome content
Genome length	43,147 bps
GC content	39.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	87.26%
Average CDS length	686.56 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187093_1	Structural annotation	PF09826, MF_04071, NF008351, COG5276	NA	NA
UHGV-0187093_2	PHROG	phrog_18190	NA	unknown function
UHGV-0187093_2	eggNOG-mapper	428125.CLOLEP_02759	pathogenesis	NA
UHGV-0187093_2	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0187093_2	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0187093_3	PHROG	phrog_1194	NA	unknown function
UHGV-0187093_3	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0187093_3	Pfam	PF20458	NA	DUF6711
UHGV-0187093_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0187093_4	PHROG	phrog_1204	tail protein	tail
UHGV-0187093_4	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0187093_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0187093_5	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187093_5	UniRef90	UniRef90_UPI000CF201CD	GIY-YIG nuclease family protein	NA
UHGV-0187093_5	eggNOG-mapper	926559.JoomaDRAFT_1090	Intron encoded nuclease repeat motif	NA
UHGV-0187093_5	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0187093_5	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0187093_5	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0187093_5	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0187093_5	Structural annotation	PF19835, TIGR01453, COG2827	NA	NA
UHGV-0187093_6	PHROG	phrog_28918	NA	unknown function
UHGV-0187093_6	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0187093_6	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0187093_8	PHROG	phrog_36112	NA	unknown function
UHGV-0187093_8	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-0187093_8	Structural annotation	PF10666	NA	NA
UHGV-0187093_9	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0187093_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0187093_10	PHROG	phrog_443	holin	lysis
UHGV-0187093_10	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0187093_10	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0187093_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0187093_10	Structural annotation	PF16945	NA	NA
UHGV-0187093_11	Structural annotation	PF05657	NA	NA
UHGV-0187093_12	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0187093_12	UniRef90	UniRef90_A0A317UDN3	Rha family transcriptional regulator	NA
UHGV-0187093_12	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0187093_12	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0187093_12	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0187093_12	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0187093_12	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0187093_13	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0187093_13	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0187093_13	AcrCatalog	cluster_24841	NA	NA
UHGV-0187093_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0187093_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0187093_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0187093_15	UniRef90	UniRef90_A0A373N0F6	Integrase	NA
UHGV-0187093_15	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0187093_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0187093_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187093_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0187093_15	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0187093_16	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0187093_17	UniRef90	UniRef90_A0A417A921	NA	NA
UHGV-0187093_17	Pfam	PF12664	NA	DUF3789
UHGV-0187093_20	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0187093_20	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0187093_20	UniRef90	UniRef90_A0A417A9G0	Reverse transcriptase domain-containing protein	NA
UHGV-0187093_20	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0187093_20	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0187093_20	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0187093_20	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0187093_20	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0187093_21	PHROG	phrog_17147	NA	unknown function
UHGV-0187093_21	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0187093_21	eggNOG-mapper	1273103.NM10_03056	NA	NA
UHGV-0187093_22	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0187093_22	Structural annotation	PF16255, PF17065, NF011908, COG2755	NA	NA
UHGV-0187093_24	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0187093_26	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0187093_27	PHROG	phrog_16490	NA	unknown function
UHGV-0187093_27	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0187093_29	PHROG	phrog_21718	NA	unknown function
UHGV-0187093_29	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0187093_30	UniRef90	UniRef90_A0A412EMQ9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0187093_30	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0187093_30	Structural annotation	PF04545, MF_00674, NF001073, COG1595	NA	NA
UHGV-0187093_31	PHROG	phrog_937	hemolysin	other
UHGV-0187093_32	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0187093_33	PHROG	phrog_29	major head protein	head and packaging
UHGV-0187093_33	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-0187093_33	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0187093_33	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0187093_33	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0187093_34	PHROG	phrog_909	major head protein	head and packaging
UHGV-0187093_34	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0187093_34	Structural annotation	PF02924	NA	NA
UHGV-0187093_35	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0187093_35	Structural annotation	PF14265	NA	NA
UHGV-0187093_36	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0187093_36	UniRef90	UniRef90_D7GWD5	Phage Mu protein F like protein	NA
UHGV-0187093_36	eggNOG-mapper	1329516.JPST01000018_gene2643	cell adhesion	NA
UHGV-0187093_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0187093_36	COG	COG2369	NA	NA
UHGV-0187093_36	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0187093_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0187093_37	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-0187093_37	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0187093_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187093_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0187093_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0187093_38	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0187093_38	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0187093_38	Pfam	PF07374	NA	DUF1492
UHGV-0187093_38	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0187093_38	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0187093_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0187093_39	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-0187093_39	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0187093_39	COG	COG5410	NA	NA
UHGV-0187093_39	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0187093_40	PHROG	phrog_3886	NA	unknown function
UHGV-0187093_40	eggNOG-mapper	742733.HMPREF9469_05056	NA	NA
UHGV-0187093_41	KOfam	K03744	lemA; LemA protein	NA
UHGV-0187093_41	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0187093_41	UniRef90	UniRef90_A0A414SKJ0	LemA family protein	NA
UHGV-0187093_41	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0187093_41	Pfam	PF04011	LemA family	LemA
UHGV-0187093_41	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0187093_41	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0187093_48	PHROG	phrog_6730	NA	unknown function
UHGV-0187093_48	eggNOG-mapper	1136534.J9PTY8_9CAUD	NA	NA
UHGV-0187093_48	Structural annotation	PF00684	NA	NA
UHGV-0187093_49	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187093_49	UniRef90	UniRef90_A0A3E5EPH1	NA	NA
UHGV-0187093_49	eggNOG-mapper	476272.RUMHYD_01913	NA	NA
UHGV-0187093_49	Pfam	PF11443	NA	DUF2828
UHGV-0187093_49	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0187093_49	Structural annotation	PF11443, MF_01340, COG2304	NA	NA
UHGV-0187093_52	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0187093_54	eggNOG-mapper	1158610.UC3_00023	Helix-turn-helix domain of resolvase	NA
UHGV-0187093_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187093_54	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-0187093_55	eggNOG-mapper	476272.RUMHYD_01907	NA	NA