UHGV-0187129

Genome information

Genome length 36,546 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187129
vOTU ID	vOTU-046969
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598355
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.84
Jumbo phage	No

Genome content
Genome length	36,546 bps
GC content	60.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.09%
Average CDS length	528.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187129_1	PHROG	phrog_21498	NA	unknown function
UHGV-0187129_1	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0187129_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0187129_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0187129_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187129_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187129_1	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0187129_3	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187129_3	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0187129_3	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0187129_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0187129_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187129_3	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0187129_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187129_4	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0187129_4	Structural annotation	PF11726	NA	NA
UHGV-0187129_8	Structural annotation	PF06657	NA	NA
UHGV-0187129_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0187129_9	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0187129_9	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0187129_9	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0187129_11	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187129_11	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0187129_11	eggNOG-mapper	1511.CLOST_1546	HNH endonuclease	NA
UHGV-0187129_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0187129_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187129_11	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0187129_12	PHROG	phrog_38832	NA	unknown function
UHGV-0187129_12	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0187129_12	Structural annotation	PF18300, MF_01549, NF008636, COG4568	NA	NA
UHGV-0187129_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0187129_16	PHROG	phrog_27290	NA	unknown function
UHGV-0187129_16	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0187129_16	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0187129_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187129_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187129_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187129_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0187129_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0187129_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0187129_17	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0187129_17	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0187129_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-0187129_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0187129_17	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0187129_18	PHROG	phrog_27610	NA	unknown function
UHGV-0187129_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0187129_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0187129_19	UniRef90	UniRef90_A0A3D4EGZ7	DNA helicase	NA
UHGV-0187129_19	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0187129_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0187129_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0187129_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0187129_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0187129_20	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0187129_20	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0187129_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0187129_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187129_20	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0187129_22	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0187129_22	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0187129_22	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0187129_22	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187129_22	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187129_22	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0187129_22	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0187129_23	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0187129_24	UniRef90	UniRef90_A0A8J6J0T8	Helix-turn-helix transcriptional regulator	NA
UHGV-0187129_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187129_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187129_26	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0187129_26	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0187129_27	PHROG	phrog_17982	NA	unknown function
UHGV-0187129_27	eggNOG-mapper	632245.CLP_2952	cell wall binding repeat	NA
UHGV-0187129_27	Pfam	PF14020	NA	DUF4236
UHGV-0187129_27	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0187129_27	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0187129_27	Structural annotation	PF14020	NA	NA
UHGV-0187129_28	KOfam	K14059	int; integrase	NA
UHGV-0187129_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0187129_28	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0187129_28	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0187129_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187129_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187129_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187129_28	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187129_29	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0187129_29	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0187129_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187129_34	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0187129_34	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0187129_35	PHROG	phrog_21825	endolysin	lysis
UHGV-0187129_35	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0187129_35	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0187129_35	Pfam	PF05257	CHAP domain	CHAP
UHGV-0187129_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0187129_35	Structural annotation	TIGR02594	NA	NA
UHGV-0187129_36	PHROG	phrog_13256	NA	unknown function
UHGV-0187129_36	eggNOG-mapper	1519439.JPJG01000023_gene535	NA	NA
UHGV-0187129_38	PHROG	phrog_4105	NA	unknown function
UHGV-0187129_41	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0187129_41	UniRef90	UniRef90_A0A252F2M2	NA	NA
UHGV-0187129_41	Pfam	PF19789	NA	DUF6273
UHGV-0187129_41	Structural annotation	PF19789	NA	NA
UHGV-0187129_44	Pfam	PF18902	NA	DUF5658
UHGV-0187129_44	Structural annotation	PF18902	NA	NA
UHGV-0187129_46	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0187129_46	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0187129_46	Structural annotation	TIGR01643	NA	NA
UHGV-0187129_47	PHROG	phrog_6616	tail protein	tail
UHGV-0187129_47	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0187129_47	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0187129_47	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0187129_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0187129_49	PHROG	phrog_23464	NA	unknown function
UHGV-0187129_49	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0187129_49	COG	COG5412	Phage-related protein	NA
UHGV-0187129_49	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0187129_51	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0187129_52	PHROG	phrog_88	major tail protein	tail
UHGV-0187129_52	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0187129_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187129_53	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0187129_53	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0187129_53	Structural annotation	TIGR01725	NA	NA
UHGV-0187129_54	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0187129_54	Structural annotation	PF05657	NA	NA
UHGV-0187129_55	PHROG	phrog_25	head closure Hc1	connector
UHGV-0187129_55	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0187129_55	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0187129_55	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0187129_55	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0187129_55	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0187129_55	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187129_56	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0187129_56	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0187129_56	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0187129_56	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0187129_57	eggNOG-mapper	693746.OBV_20050	NA	NA
UHGV-0187129_57	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0187129_58	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187129_58	UniRef90	UniRef90_A0A7X3DGW7	Phage major capsid protein	NA
UHGV-0187129_58	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0187129_58	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187129_58	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187129_58	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187129_58	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187129_59	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0187129_59	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0187129_59	UniRef90	UniRef90_A0A8J6M5P1	Clp protease ClpP	NA
UHGV-0187129_59	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-0187129_59	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0187129_59	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0187129_59	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0187129_60	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187129_60	UniRef90	UniRef90_A0A7X3AS02	Phage portal protein	NA
UHGV-0187129_60	eggNOG-mapper	1007096.BAGW01000012_gene2376	Phage portal protein	NA
UHGV-0187129_60	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187129_60	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0187129_60	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187129_60	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187129_62	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187129_62	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0187129_62	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0187129_62	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187129_62	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187129_62	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187129_62	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0187129_63	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0187129_63	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0187129_63	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0187129_63	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0187129_63	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0187129_63	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0187129_63	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA