UHGV-0187207

Genome information

Genome length 42,399 bps

CDS count 91

Completeness 54.03% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187207
vOTU ID	vOTU-022434
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594932
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.41
Jumbo phage	No

Genome content
Genome length	42,399 bps
GC content	38.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	84.81%
Average CDS length	399.40 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187207_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0187207_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0187207_1	UniRef90	UniRef90_A0A3E5EPX6	Reverse transcriptase domain-containing protein	NA
UHGV-0187207_1	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0187207_1	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0187207_1	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0187207_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0187207_1	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0187207_2	PHROG	phrog_25456	NA	unknown function
UHGV-0187207_4	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0187207_4	UniRef90	UniRef90_A0A412SAY1	MBL fold metallo-hydrolase	NA
UHGV-0187207_4	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0187207_4	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0187207_4	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0187207_5	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0187207_5	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0187207_5	UniRef90	UniRef90_A0A3E5ENP5	MBL fold metallo-hydrolase	NA
UHGV-0187207_5	eggNOG-mapper	476272.RUMHYD_03342	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0187207_5	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0187207_5	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0187207_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0187207_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187207_8	UniRef90	UniRef90_A0A3E5ENP0	Single-stranded DNA-binding protein	NA
UHGV-0187207_8	eggNOG-mapper	411461.DORFOR_00370	Single-strand binding protein family	NA
UHGV-0187207_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0187207_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0187207_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0187207_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0187207_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0187207_10	PHROG	phrog_2164	NA	unknown function
UHGV-0187207_11	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187207_11	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0187207_11	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0187207_12	PHROG	phrog_19106	NA	unknown function
UHGV-0187207_12	UniRef90	UniRef90_A0A1C5S1S5	Group I intron endonuclease	NA
UHGV-0187207_12	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0187207_12	Structural annotation	TIGR01453	NA	NA
UHGV-0187207_13	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0187207_13	eggNOG-mapper	1280689.AUJC01000005_gene809	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0187207_13	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0187207_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0187207_13	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0187207_14	Structural annotation	PF04936	NA	NA
UHGV-0187207_17	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0187207_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0187207_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0187207_18	UniRef90	UniRef90_UPI000E4E54B6	DNA cytosine methyltransferase	NA
UHGV-0187207_18	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0187207_18	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0187207_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0187207_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187207_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0187207_20	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0187207_21	PHROG	phrog_4601	NA	unknown function
UHGV-0187207_22	PHROG	phrog_419	NA	unknown function
UHGV-0187207_22	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0187207_22	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0187207_23	UniRef90	UniRef90_UPI0018A9016D	NA	NA
UHGV-0187207_23	Pfam	PF04448	NA	DUF551
UHGV-0187207_26	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0187207_26	AcrCatalog	cluster_11670	NA	NA
UHGV-0187207_28	PHROG	phrog_20593	NA	unknown function
UHGV-0187207_29	PHROG	phrog_19515	NA	unknown function
UHGV-0187207_29	eggNOG-mapper	457412.RSAG_01163	NA	NA
UHGV-0187207_30	PHROG	phrog_8684	NA	unknown function
UHGV-0187207_30	UniRef90	UniRef90_A0A3A6GQT2	YopX domain-containing protein	NA
UHGV-0187207_30	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0187207_30	Pfam	PF09643	YopX protein	YopX
UHGV-0187207_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0187207_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0187207_34	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0187207_34	Structural annotation	PF09038	NA	NA
UHGV-0187207_35	Structural annotation	PF17630	NA	NA
UHGV-0187207_38	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0187207_38	UniRef90	UniRef90_A0A2H4JF78	Putative DNA replication protein	NA
UHGV-0187207_38	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-0187207_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187207_38	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0187207_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0187207_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0187207_39	UniRef90	UniRef90_A0A3E5ENL1	Bac_DnaA domain-containing protein	NA
UHGV-0187207_39	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0187207_39	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0187207_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0187207_43	KOfam	K14059	int; integrase	NA
UHGV-0187207_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0187207_43	UniRef90	UniRef90_UPI001960406E	site-specific integrase	NA
UHGV-0187207_43	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0187207_43	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0187207_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187207_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187207_43	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187207_45	PHROG	phrog_8680	NA	unknown function
UHGV-0187207_45	UniRef90	UniRef90_A0A412EMT7	NA	NA
UHGV-0187207_45	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0187207_45	Pfam	PF14386	NA	DUF4417
UHGV-0187207_45	Structural annotation	PF14386	NA	NA
UHGV-0187207_51	PHROG	phrog_31631	NA	unknown function
UHGV-0187207_54	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0187207_56	UniRef90	UniRef90_A0A6N2TPV5	RHH_1 domain-containing protein	NA
UHGV-0187207_56	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0187207_57	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0187207_66	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0187207_66	PHROG	phrog_2577	transposase	integration and excision
UHGV-0187207_66	UniRef90	UniRef90_A0A373V5T0	IS200/IS605 family transposase	NA
UHGV-0187207_66	eggNOG-mapper	411459.RUMOBE_01964	Transposase IS200 like	NA
UHGV-0187207_66	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0187207_66	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0187207_66	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0187207_66	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0187207_67	KOfam	K07496	K07496; putative transposase	NA
UHGV-0187207_67	PHROG	phrog_506	transposase	integration and excision
UHGV-0187207_67	UniRef90	UniRef90_A0A6L8TA70	IS200/IS605 family element transposase accessory protein TnpB	NA
UHGV-0187207_67	eggNOG-mapper	411459.RUMOBE_01965	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0187207_67	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0187207_67	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0187207_67	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0187207_67	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0187207_67	COG	COG0675	Transposase	NA
UHGV-0187207_67	Structural annotation	PF01385, MF_00034, NF038281, COG0675	NA	NA
UHGV-0187207_74	PHROG	phrog_3002	NA	unknown function
UHGV-0187207_75	PHROG	phrog_14301	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0187207_75	UniRef90	UniRef90_UPI001ADCC41E	NA	NA
UHGV-0187207_75	eggNOG-mapper	1429046.RR21198_4862	NA	NA
UHGV-0187207_75	Pfam	PF17720	NA	DUF5565
UHGV-0187207_75	Structural annotation	PF17720	NA	NA
UHGV-0187207_76	KOfam	K03744	lemA; LemA protein	NA
UHGV-0187207_76	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0187207_76	UniRef90	UniRef90_A0A414SKJ0	LemA family protein	NA
UHGV-0187207_76	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0187207_76	Pfam	PF04011	LemA family	LemA
UHGV-0187207_76	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0187207_76	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0187207_77	PHROG	phrog_3886	NA	unknown function
UHGV-0187207_77	eggNOG-mapper	742733.HMPREF9469_05056	NA	NA
UHGV-0187207_78	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0187207_78	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0187207_78	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0187207_78	COG	COG5410	NA	NA
UHGV-0187207_78	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0187207_79	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0187207_79	UniRef90	UniRef90_A0A412EN86	NA	NA
UHGV-0187207_79	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0187207_79	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0187207_79	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0187207_80	PHROG	phrog_64	portal protein	head and packaging
UHGV-0187207_80	UniRef90	UniRef90_A0A1C5RXC5	Phage portal protein, SPP1 family	NA
UHGV-0187207_80	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0187207_80	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187207_80	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0187207_81	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0187207_81	Structural annotation	PF14265	NA	NA
UHGV-0187207_82	PHROG	phrog_909	major head protein	head and packaging
UHGV-0187207_82	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0187207_82	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0187207_82	Structural annotation	PF02924	NA	NA
UHGV-0187207_83	PHROG	phrog_29	major head protein	head and packaging
UHGV-0187207_83	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-0187207_83	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0187207_83	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0187207_83	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0187207_84	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0187207_85	PHROG	phrog_937	hemolysin	other
UHGV-0187207_86	UniRef90	UniRef90_A0A412EMQ9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0187207_86	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0187207_88	PHROG	phrog_21718	NA	unknown function
UHGV-0187207_88	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0187207_90	PHROG	phrog_16490	NA	unknown function
UHGV-0187207_90	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA