UHGV-0187332

Genome information

Genome length 60,327 bps

CDS count 93

Completeness 99.90% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187332
vOTU ID	vOTU-069166
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594663
BioSample	SAMN09781783
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.83
Jumbo phage	No

Genome content
Genome length	60,327 bps
GC content	43.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	89.84%
Average CDS length	586.07 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187332_1	PHROG	phrog_6969	NA	unknown function
UHGV-0187332_1	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-0187332_1	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0187332_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0187332_3	PHROG	phrog_18107	NA	unknown function
UHGV-0187332_3	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-0187332_3	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0187332_3	Structural annotation	PF05037	NA	NA
UHGV-0187332_4	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0187332_4	UniRef90	UniRef90_R6SKG3	AAA domain-containing protein	NA
UHGV-0187332_4	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0187332_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0187332_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0187332_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0187332_5	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0187332_5	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0187332_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0187332_5	Structural annotation	PF05565	NA	NA
UHGV-0187332_8	KOfam	K07483	K07483; transposase	NA
UHGV-0187332_8	PHROG	phrog_151	transposase	integration and excision
UHGV-0187332_8	UniRef90	UniRef90_A0A1G5AU25	Transposase	NA
UHGV-0187332_8	eggNOG-mapper	877424.ATWC01000044_gene1644	Transposase	NA
UHGV-0187332_8	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0187332_8	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0187332_8	Structural annotation	PF02796, MF_00674, NF006928, COG3415	NA	NA
UHGV-0187332_9	KOfam	K07497	K07497; putative transposase	NA
UHGV-0187332_9	PHROG	phrog_157	transposase	integration and excision
UHGV-0187332_9	UniRef90	UniRef90_A0A1G5GD71	Transposase InsO and inactivated derivatives (Fragment)	NA
UHGV-0187332_9	eggNOG-mapper	877424.ATWC01000044_gene1643	Integrase core domain	NA
UHGV-0187332_9	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0187332_9	Pfam	PF00665	Integrase core domain	rve
UHGV-0187332_9	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0187332_9	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0187332_9	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0187332_9	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA
UHGV-0187332_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187332_15	UniRef90	UniRef90_UPI001AE408DD	helix-turn-helix domain-containing protein	NA
UHGV-0187332_15	eggNOG-mapper	226185.EF_2040	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0187332_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187332_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187332_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187332_16	UniRef90	UniRef90_A0A4R2LQN9	Helix-turn-helix protein	NA
UHGV-0187332_16	eggNOG-mapper	642492.Clole_1825	sequence-specific DNA binding	NA
UHGV-0187332_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187332_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187332_16	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0187332_17	PHROG	phrog_87	metallo-protease	other
UHGV-0187332_17	UniRef90	UniRef90_A0A5C0SGH7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0187332_17	eggNOG-mapper	1294142.CINTURNW_0291	IrrE N-terminal-like domain	NA
UHGV-0187332_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0187332_17	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0187332_17	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0187332_18	eggNOG-mapper	1122216.AUHW01000007_gene1473	nuclease	NA
UHGV-0187332_18	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0187332_19	KOfam	K14059	int; integrase	NA
UHGV-0187332_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0187332_19	UniRef90	UniRef90_A0A7X7EIT8	Tyrosine-type recombinase/integrase	NA
UHGV-0187332_19	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0187332_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187332_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187332_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187332_19	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187332_20	PHROG	phrog_14770	NA	unknown function
UHGV-0187332_20	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0187332_20	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0187332_20	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0187332_21	Pfam	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain	GlutR_dimer
UHGV-0187332_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187332_24	PHROG	phrog_16490	NA	unknown function
UHGV-0187332_24	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0187332_25	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0187332_26	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0187332_27	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0187332_28	UniRef90	UniRef90_A0A6P1MDS2	Peptidase_C39_2 domain-containing protein	NA
UHGV-0187332_28	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0187332_28	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0187332_28	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0187332_29	PHROG	phrog_1048	NA	unknown function
UHGV-0187332_29	UniRef90	UniRef90_UPI001D084C4A	NA	NA
UHGV-0187332_29	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0187332_29	Pfam	PF11195	NA	DUF2829
UHGV-0187332_29	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0187332_29	Structural annotation	PF11195	NA	NA
UHGV-0187332_30	PHROG	phrog_13256	NA	unknown function
UHGV-0187332_30	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0187332_31	PHROG	phrog_4105	NA	unknown function
UHGV-0187332_36	Structural annotation	NF012201	NA	NA
UHGV-0187332_37	PHROG	phrog_18608	NA	unknown function
UHGV-0187332_37	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0187332_37	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0187332_41	eggNOG-mapper	445971.ANASTE_02357	NA	NA
UHGV-0187332_42	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0187332_42	UniRef90	UniRef90_A0A316QAY3	Phage major capsid protein	NA
UHGV-0187332_42	eggNOG-mapper	445971.ANASTE_00901	NA	NA
UHGV-0187332_42	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0187332_42	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0187332_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-0187332_44	eggNOG-mapper	445971.ANASTE_00955	NA	NA
UHGV-0187332_44	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0187332_47	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0187332_47	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0187332_47	eggNOG-mapper	588581.Cpap_1523	Terminase-like family	NA
UHGV-0187332_47	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0187332_47	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0187332_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187332_51	Structural annotation	NF040976	NA	NA
UHGV-0187332_52	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0187332_53	UniRef90	UniRef90_UPI00068D56A5	antirestriction protein ArdA	NA
UHGV-0187332_55	Structural annotation	COG1724	NA	NA
UHGV-0187332_58	Structural annotation	PF20082	NA	NA
UHGV-0187332_60	PHROG	phrog_10678	NA	unknown function
UHGV-0187332_61	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-0187332_61	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-0187332_61	UniRef90	UniRef90_A0A7X8GYN4	Co-chaperonin GroES	NA
UHGV-0187332_61	eggNOG-mapper	52598.EE36_03888	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-0187332_61	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0187332_61	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0187332_61	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-0187332_63	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0187332_63	UniRef90	UniRef90_A0A3M1N1V4	Stage V sporulation protein S	NA
UHGV-0187332_63	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0187332_63	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0187332_64	PHROG	phrog_474	phosphofructokinase	other
UHGV-0187332_64	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0187332_64	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0187332_64	Pfam	PF19905	NA	DUF6378
UHGV-0187332_65	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0187332_65	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0187332_65	UniRef90	UniRef90_A0A496N5A7	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0187332_65	eggNOG-mapper	1163671.JAGI01000002_gene2135	NA	NA
UHGV-0187332_65	Pfam	PF00692	dUTPase	dUTPase
UHGV-0187332_65	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0187332_65	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0187332_67	PHROG	phrog_1374	NA	unknown function
UHGV-0187332_67	UniRef90	UniRef90_Q4ZD31	ORF040	NA
UHGV-0187332_67	eggNOG-mapper	1141106.CAIB01000118_gene947	NA	NA
UHGV-0187332_67	Structural annotation	TIGR04438	NA	NA
UHGV-0187332_71	UniRef90	UniRef90_A0A414QEQ0	NA	NA
UHGV-0187332_74	UniRef90	UniRef90_A0A6N2Z2X2	HTH cro/C1-type domain-containing protein	NA
UHGV-0187332_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187332_74	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0187332_75	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0187332_75	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0187332_75	UniRef90	UniRef90_A0A7U9R7H5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0187332_75	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0187332_75	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0187332_75	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0187332_75	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0187332_77	UniRef90	UniRef90_A0A166T026	NA	NA
UHGV-0187332_78	PHROG	phrog_17842	NA	unknown function
UHGV-0187332_79	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0187332_81	Structural annotation	PF13876	NA	NA
UHGV-0187332_85	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0187332_85	PHROG	phrog_200	lipoprotein	other
UHGV-0187332_85	UniRef90	UniRef90_A0A6L5XX21	Prohibitin family protein	NA
UHGV-0187332_85	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0187332_85	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0187332_85	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0187332_85	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0187332_87	PHROG	phrog_22292	NA	unknown function
UHGV-0187332_88	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187332_88	Pfam	PF12855	ECL1/2/3 zinc binding proteins	Ecl1
UHGV-0187332_88	Structural annotation	PF09889, NF001638, COG4068, COG4338	NA	NA
UHGV-0187332_89	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187332_89	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0187332_89	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0187332_92	PHROG	phrog_9804	NA	unknown function
UHGV-0187332_92	UniRef90	UniRef90_A0A371AZQ1	Inhibitor_G39P domain-containing protein	NA
UHGV-0187332_92	eggNOG-mapper	1094508.Tsac_2439	Loader and inhibitor of phage G40P	NA
UHGV-0187332_92	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0187332_92	Structural annotation	PF11417	NA	NA
UHGV-0187332_93	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0187332_93	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0187332_93	COG	COG3935	DNA replication protein DnaD	NA