UHGV-0187352

Genome information

Genome length 35,870 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187352
vOTU ID	vOTU-009001
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA1906446_a1_ct100372_vs1@Siphoviridae__sp._ctbwT1
BioSample	SAMEA1906446
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.12
Jumbo phage	No

Genome content
Genome length	35,870 bps
GC content	39.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	88.70%
Average CDS length	571.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187352_1	PHROG	phrog_199	holin	lysis
UHGV-0187352_1	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-0187352_1	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0187352_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0187352_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0187352_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0187352_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0187352_3	PHROG	phrog_24103	NA	unknown function
UHGV-0187352_3	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0187352_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0187352_4	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0187352_5	PHROG	phrog_15594	NA	unknown function
UHGV-0187352_5	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0187352_5	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0187352_6	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0187352_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0187352_7	PHROG	phrog_11037	NA	unknown function
UHGV-0187352_7	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0187352_7	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0187352_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0187352_7	Structural annotation	PF18013	NA	NA
UHGV-0187352_8	PHROG	phrog_13289	tail protein	tail
UHGV-0187352_8	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0187352_8	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0187352_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0187352_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0187352_8	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0187352_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0187352_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0187352_9	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0187352_9	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0187352_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0187352_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0187352_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0187352_10	PHROG	phrog_23464	NA	unknown function
UHGV-0187352_10	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0187352_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0187352_12	PHROG	phrog_88	major tail protein	tail
UHGV-0187352_12	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0187352_12	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0187352_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0187352_12	COG	COG5492	NA	NA
UHGV-0187352_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0187352_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187352_13	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0187352_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0187352_13	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0187352_14	Structural annotation	PF05657	NA	NA
UHGV-0187352_15	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0187352_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187352_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187352_17	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0187352_17	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0187352_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187352_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187352_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187352_17	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0187352_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0187352_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0187352_18	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0187352_18	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0187352_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0187352_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0187352_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0187352_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187352_19	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0187352_19	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0187352_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187352_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187352_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187352_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187352_20	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0187352_20	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0187352_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187352_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187352_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187352_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0187352_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0187352_21	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0187352_21	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0187352_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0187352_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0187352_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0187352_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187352_22	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0187352_22	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0187352_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0187352_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187352_23	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0187352_23	UniRef90	UniRef90_A0A1C5MP22	Predicted membrane protein	NA
UHGV-0187352_23	eggNOG-mapper	585501.HMPREF6123_0812	NA	NA
UHGV-0187352_23	Pfam	PF10097	NA	DUF2335
UHGV-0187352_23	COG	COG5346	NA	NA
UHGV-0187352_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0187352_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0187352_28	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-0187352_28	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0187352_33	Structural annotation	NF011508	NA	NA
UHGV-0187352_35	PHROG	phrog_15077	NA	unknown function
UHGV-0187352_35	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0187352_35	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0187352_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0187352_36	PHROG	phrog_8470	NA	unknown function
UHGV-0187352_36	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0187352_36	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0187352_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0187352_36	Structural annotation	PF14284	NA	NA
UHGV-0187352_37	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0187352_40	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0187352_40	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0187352_41	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0187352_42	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0187352_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0187352_42	UniRef90	UniRef90_C4Z812	Ribonuclease H	NA
UHGV-0187352_42	eggNOG-mapper	635013.TherJR_1738	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0187352_42	Pfam	PF00075	RNase H	RNase_H
UHGV-0187352_42	COG	COG0328	Ribonuclease HI	NA
UHGV-0187352_42	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0187352_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187352_43	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0187352_43	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0187352_45	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0187352_46	PHROG	phrog_9607	NA	unknown function
UHGV-0187352_46	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0187352_46	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0187352_48	PHROG	phrog_20330	NA	unknown function
UHGV-0187352_48	eggNOG-mapper	1094508.Tsac_2450	NA	NA
UHGV-0187352_50	UniRef90	UniRef90_A0A355TLU7	NA	NA
UHGV-0187352_50	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0187352_50	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0187352_50	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0187352_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187352_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187352_51	UniRef90	UniRef90_UPI00156FB04E	helix-turn-helix domain-containing protein	NA
UHGV-0187352_51	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187352_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187352_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187352_51	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0187352_52	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0187352_52	PHROG	phrog_8036	NA	unknown function
UHGV-0187352_52	UniRef90	UniRef90_A0A6N2UQZ1	DNA-damage-inducible protein D	NA
UHGV-0187352_52	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0187352_52	AcrCatalog	cluster_17589	NA	NA
UHGV-0187352_52	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0187352_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0187352_52	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0187352_52	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0187352_52	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0187352_53	eggNOG-mapper	1408311.JNJM01000007_gene933	NA	NA
UHGV-0187352_53	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187352_54	PHROG	phrog_10226	NA	unknown function
UHGV-0187352_54	eggNOG-mapper	1121091.AUMP01000069_gene1397	Restriction endonuclease	NA
UHGV-0187352_54	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0187352_54	Structural annotation	COG4127	NA	NA
UHGV-0187352_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0187352_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0187352_56	UniRef90	UniRef90_C4Z7Z8	Site-specific recombinase	NA
UHGV-0187352_56	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0187352_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0187352_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0187352_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0187352_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187352_56	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA