UHGV-0187359

Genome information

Genome length 39,676 bps

CDS count 44

Completeness 62.62% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187359
vOTU ID	vOTU-022824
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596330
BioSample	SAMN09781786
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.81
Jumbo phage	No

Genome content
Genome length	39,676 bps
GC content	39.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.51%
Average CDS length	827.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187359_1	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0187359_1	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0187359_2	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0187359_2	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0187359_2	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-0187359_4	PHROG	phrog_4259	NA	unknown function
UHGV-0187359_4	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0187359_6	PHROG	phrog_32444	NA	unknown function
UHGV-0187359_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187359_7	UniRef90	UniRef90_A0A396PA20	Terminase	NA
UHGV-0187359_7	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0187359_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187359_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187359_7	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0187359_8	PHROG	phrog_774	NA	unknown function
UHGV-0187359_8	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0187359_10	Structural annotation	PF16789, TIGR02473, COG1579	NA	NA
UHGV-0187359_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187359_11	UniRef90	UniRef90_A0A396PDA9	Phage portal protein	NA
UHGV-0187359_11	eggNOG-mapper	742733.HMPREF9469_05032	Phage portal protein	NA
UHGV-0187359_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187359_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187359_12	KOfam	K06904	NA	NA
UHGV-0187359_12	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0187359_12	UniRef90	UniRef90_A0A396PAX7	Phage major capsid protein	NA
UHGV-0187359_12	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0187359_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187359_12	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0187359_13	PHROG	phrog_4270	NA	unknown function
UHGV-0187359_13	eggNOG-mapper	411460.RUMTOR_01344	NA	NA
UHGV-0187359_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0187359_14	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0187359_14	Structural annotation	PF20765	NA	NA
UHGV-0187359_15	PHROG	phrog_2645	major tail protein	tail
UHGV-0187359_15	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0187359_15	eggNOG-mapper	742733.HMPREF9469_05026	NA	NA
UHGV-0187359_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0187359_16	PHROG	phrog_4282	NA	unknown function
UHGV-0187359_16	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0187359_17	PHROG	phrog_4338	NA	unknown function
UHGV-0187359_17	eggNOG-mapper	478749.BRYFOR_08516	NA	NA
UHGV-0187359_18	UniRef90	UniRef90_A0A374AC21	HK97 gp10 family phage protein	NA
UHGV-0187359_18	eggNOG-mapper	478749.BRYFOR_08514	NA	NA
UHGV-0187359_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0187359_18	Structural annotation	TIGR01725	NA	NA
UHGV-0187359_19	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0187359_19	UniRef90	UniRef90_UPI0015709176	peptidoglycan-binding protein	NA
UHGV-0187359_19	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0187359_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0187359_19	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0187359_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0187359_19	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0187359_20	KOfam	K24485	FNDC3; fibronectin type III domain-containing protein 3	NA
UHGV-0187359_20	PHROG	phrog_380	endolysin	lysis
UHGV-0187359_20	UniRef90	UniRef90_UPI001314CF95	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0187359_20	eggNOG-mapper	478749.BRYFOR_08512	Fibronectin type 3 domain	NA
UHGV-0187359_20	Pfam	PF01476	LysM domain	LysM
UHGV-0187359_20	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0187359_20	Structural annotation	PF06995, PF02010, PF18001, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0187359_21	PHROG	phrog_1887	tail protein	tail
UHGV-0187359_21	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0187359_21	eggNOG-mapper	478749.BRYFOR_08511	NA	NA
UHGV-0187359_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0187359_22	PHROG	phrog_16267	NA	unknown function
UHGV-0187359_22	eggNOG-mapper	1392487.JIAD01000001_gene510	NA	NA
UHGV-0187359_22	Structural annotation	PF01455, NF003076	NA	NA
UHGV-0187359_23	PHROG	phrog_38044	NA	unknown function
UHGV-0187359_23	UniRef90	UniRef90_A0A2V1JQ53	Ig-like domain-containing protein	NA
UHGV-0187359_23	eggNOG-mapper	1410624.JNKK01000045_gene547	NA	NA
UHGV-0187359_23	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0187359_24	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0187359_27	PHROG	phrog_1129	holin	lysis
UHGV-0187359_27	UniRef90	UniRef90_A0A414P831	Holin	NA
UHGV-0187359_27	eggNOG-mapper	478749.BRYFOR_08506	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0187359_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0187359_27	Structural annotation	PF06946	NA	NA
UHGV-0187359_28	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0187359_28	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0187359_30	PHROG	phrog_1493	endolysin	lysis
UHGV-0187359_30	UniRef90	UniRef90_A0A6N2TV57	Peptidoglycan binding domain protein	NA
UHGV-0187359_30	eggNOG-mapper	411459.RUMOBE_01713	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0187359_30	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0187359_30	COG	COG1388	LysM repeat	NA
UHGV-0187359_30	Structural annotation	PF01374, PF10030, TIGR02594	NA	NA
UHGV-0187359_31	KOfam	K14059	int; integrase	NA
UHGV-0187359_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0187359_31	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0187359_31	eggNOG-mapper	665950.HMPREF1025_01927	Phage integrase family	NA
UHGV-0187359_31	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187359_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187359_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187359_31	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0187359_32	PHROG	phrog_10675	NA	unknown function
UHGV-0187359_32	UniRef90	UniRef90_UPI00164A3B96	NA	NA
UHGV-0187359_32	eggNOG-mapper	411460.RUMTOR_02456	COG NOG23522 non supervised orthologous group	NA
UHGV-0187359_32	Pfam	PF20020	NA	DUF6431
UHGV-0187359_32	COG	COG3464	Transposase	NA
UHGV-0187359_32	Structural annotation	PF20020, TIGR03831, COG3436	NA	NA
UHGV-0187359_33	PHROG	phrog_6058	NA	unknown function
UHGV-0187359_33	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0187359_33	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0187359_34	PHROG	phrog_11237	NA	unknown function
UHGV-0187359_34	eggNOG-mapper	742733.HMPREF9469_05093	NA	NA
UHGV-0187359_35	Structural annotation	PF18391	NA	NA
UHGV-0187359_38	UniRef90	UniRef90_UPI00156F086B	zinc ribbon domain-containing protein	NA
UHGV-0187359_38	eggNOG-mapper	1410626.JHXB01000019_gene1562	NA	NA
UHGV-0187359_41	PHROG	phrog_15866	NA	unknown function
UHGV-0187359_41	eggNOG-mapper	428125.CLOLEP_01351	NA	NA
UHGV-0187359_43	PHROG	phrog_17256	NA	unknown function
UHGV-0187359_43	eggNOG-mapper	478749.BRYFOR_08574	NA	NA