UHGV-0187463

Genome information

Genome length 29,866 bps

CDS count 39

Completeness 76.06% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187463
vOTU ID	vOTU-029702
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00779901_a1_ct5868_vs1@linear@Siphoviridae__sp._ctYfJ1
BioSample	SAMN00779901
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.55
Jumbo phage	No

Genome content
Genome length	29,866 bps
GC content	56.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	87.65%
Average CDS length	674.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187463_1	UniRef90	UniRef90_A0A0W7TN58	NA	NA
UHGV-0187463_1	Pfam	PF12959	NA	DUF3848
UHGV-0187463_1	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0187463_2	KOfam	K10117	msmE; raffinose/stachyose/melibiose transport system substrate-binding protein	NA
UHGV-0187463_2	UniRef90	UniRef90_A0A372WL35	Carbohydrate ABC transporter substrate-binding protein	NA
UHGV-0187463_2	eggNOG-mapper	411902.CLOBOL_02338	Bacterial extracellular solute-binding protein	NA
UHGV-0187463_2	Pfam	PF01547	Bacterial extracellular solute-binding protein	SBP_bac_1
UHGV-0187463_2	COG	COG1653	ABC-type glycerol-3-phosphate transport system, periplasmic component	NA
UHGV-0187463_3	PHROG	phrog_20258	NA	unknown function
UHGV-0187463_3	eggNOG-mapper	665956.HMPREF1032_02927	NA	NA
UHGV-0187463_4	PHROG	phrog_918	NA	unknown function
UHGV-0187463_4	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0187463_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0187463_4	Pfam	PF19791	NA	DUF6275
UHGV-0187463_4	Structural annotation	PF19791	NA	NA
UHGV-0187463_5	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0187463_5	UniRef90	UniRef90_UPI001966E044	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0187463_5	eggNOG-mapper	665956.HMPREF1032_01628	NA	NA
UHGV-0187463_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0187463_5	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0187463_7	KOfam	K14059	int; integrase	NA
UHGV-0187463_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0187463_7	UniRef90	UniRef90_G9RTP6	Tyr recombinase domain-containing protein	NA
UHGV-0187463_7	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0187463_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187463_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187463_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187463_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187463_8	PHROG	phrog_9116	tail protein	tail
UHGV-0187463_8	UniRef90	UniRef90_G9RTP9	Collar domain-containing protein (Fragment)	NA
UHGV-0187463_8	eggNOG-mapper	665956.HMPREF1032_02933	PFAM Tail Collar domain protein	NA
UHGV-0187463_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0187463_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0187463_9	PHROG	phrog_38190	NA	unknown function
UHGV-0187463_9	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0187463_10	PHROG	phrog_36886	NA	unknown function
UHGV-0187463_10	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0187463_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0187463_12	PHROG	phrog_9534	head protein	head and packaging
UHGV-0187463_12	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0187463_12	Structural annotation	PF21567	NA	NA
UHGV-0187463_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0187463_13	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0187463_13	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0187463_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0187463_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0187463_14	PHROG	phrog_36410	NA	unknown function
UHGV-0187463_14	UniRef90	UniRef90_A0A6N3F5Z2	Phage tail protein	NA
UHGV-0187463_14	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0187463_14	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0187463_15	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0187463_15	UniRef90	UniRef90_G9RTQ8	Tape measure domain-containing protein	NA
UHGV-0187463_15	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-0187463_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0187463_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0187463_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0187463_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0187463_16	PHROG	phrog_706	NA	unknown function
UHGV-0187463_16	UniRef90	UniRef90_A0A6N3F5V9	Bacteriophage Gp15 protein	NA
UHGV-0187463_16	eggNOG-mapper	665956.HMPREF1032_02943	Bacteriophage Gp15 protein	NA
UHGV-0187463_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187463_16	Structural annotation	PF06854	NA	NA
UHGV-0187463_17	PHROG	phrog_4450	NA	unknown function
UHGV-0187463_17	Pfam	PF20378	NA	DUF6673
UHGV-0187463_17	Structural annotation	PF20378	NA	NA
UHGV-0187463_19	PHROG	phrog_820	major tail protein	tail
UHGV-0187463_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0187463_19	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-0187463_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0187463_20	PHROG	phrog_3266	tail completion	connector
UHGV-0187463_20	UniRef90	UniRef90_A0A355D907	Chloramphenicol resistance protein	NA
UHGV-0187463_20	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-0187463_20	Structural annotation	PF12691	NA	NA
UHGV-0187463_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187463_21	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0187463_21	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0187463_21	Structural annotation	PF11114	NA	NA
UHGV-0187463_22	PHROG	phrog_3366	NA	unknown function
UHGV-0187463_22	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0187463_22	Pfam	PF20536	NA	DUF6751
UHGV-0187463_22	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0187463_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187463_23	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0187463_24	UniRef90	UniRef90_A0A372V0W4	C2H2-type domain-containing protein	NA
UHGV-0187463_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0187463_25	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0187463_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0187463_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187463_26	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-0187463_26	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-0187463_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187463_26	Structural annotation	PF06810	NA	NA
UHGV-0187463_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187463_28	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-0187463_28	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0187463_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187463_28	COG	COG2369	NA	NA
UHGV-0187463_28	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0187463_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187463_29	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-0187463_29	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0187463_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187463_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187463_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0187463_31	UniRef90	UniRef90_G9RTS3	PBSX family phage terminase, large subunit	NA
UHGV-0187463_31	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0187463_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0187463_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0187463_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187463_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187463_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0187463_32	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0187463_33	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0187463_33	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0187463_33	UniRef90	UniRef90_G9RTS5	NGN domain-containing protein	NA
UHGV-0187463_33	eggNOG-mapper	665956.HMPREF1032_02959	Transcription termination factor nusG	NA
UHGV-0187463_33	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0187463_33	Pfam	PF00467	KOW motif	KOW
UHGV-0187463_33	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0187463_33	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0187463_34	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0187463_34	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-0187463_34	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0187463_34	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0187463_34	Structural annotation	PF11985	NA	NA
UHGV-0187463_35	PHROG	phrog_25462	NA	unknown function
UHGV-0187463_35	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0187463_35	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0187463_36	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0187463_36	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0187463_37	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0187463_37	UniRef90	UniRef90_G9RTS9	Mor domain-containing protein	NA
UHGV-0187463_37	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-0187463_37	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0187463_37	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0187463_37	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0187463_38	PHROG	phrog_286	NA	unknown function
UHGV-0187463_38	UniRef90	UniRef90_A0A372V3L1	Regulatory protein GemA	NA
UHGV-0187463_38	eggNOG-mapper	665956.HMPREF1032_02964	NA	NA
UHGV-0187463_38	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0187463_38	Structural annotation	PF06252	NA	NA
UHGV-0187463_39	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0187463_39	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0187463_39	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0187463_39	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0187463_39	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA