UHGV-0187543

Genome information

Genome length 33,228 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9579

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187543
vOTU ID	vOTU-007297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598808
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9579
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.69
Jumbo phage	No

Genome content
Genome length	33,228 bps
GC content	56.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.59%
Average CDS length	567.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187543_1	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187543_1	UniRef90	UniRef90_UPI001431AD77	helix-turn-helix domain-containing protein	NA
UHGV-0187543_1	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0187543_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0187543_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187543_2	UniRef90	UniRef90_A0A370HKZ4	Excisionase family DNA binding protein	NA
UHGV-0187543_2	eggNOG-mapper	1121877.JQKF01000022_gene2279	Helix-turn-helix domain	NA
UHGV-0187543_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0187543_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0187543_2	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0187543_5	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0187543_5	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0187543_5	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187543_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187543_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0187543_5	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0187543_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187543_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187543_6	UniRef90	UniRef90_A0A357VGP2	XRE family transcriptional regulator	NA
UHGV-0187543_6	eggNOG-mapper	429009.Adeg_0117	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187543_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187543_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187543_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0187543_8	PHROG	phrog_585	NA	unknown function
UHGV-0187543_8	UniRef90	UniRef90_UPI0008F858E7	NA	NA
UHGV-0187543_8	eggNOG-mapper	693746.OBV_25460	NA	NA
UHGV-0187543_8	Pfam	PF10711	NA	DUF2513
UHGV-0187543_9	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0187543_9	UniRef90	UniRef90_A0A3A6HLW9	NA	NA
UHGV-0187543_9	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0187543_9	Structural annotation	PF11195	NA	NA
UHGV-0187543_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187543_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187543_10	UniRef90	UniRef90_A0A845MZE2	Helix-turn-helix domain-containing protein	NA
UHGV-0187543_10	eggNOG-mapper	1158608.I583_02533	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187543_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187543_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187543_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0187543_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187543_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187543_11	UniRef90	UniRef90_UPI000E69D3E4	helix-turn-helix domain-containing protein	NA
UHGV-0187543_11	eggNOG-mapper	384765.SIAM614_30026	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187543_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187543_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0187543_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187543_11	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0187543_12	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0187543_12	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0187543_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0187543_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0187543_13	UniRef90	UniRef90_R9J961	HicB-like domain-containing protein	NA
UHGV-0187543_13	eggNOG-mapper	397287.C807_02204	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0187543_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0187543_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0187543_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0187543_14	UniRef90	UniRef90_UPI00137A5F85	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0187543_14	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-0187543_14	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0187543_15	KOfam	K14059	int; integrase	NA
UHGV-0187543_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0187543_15	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0187543_15	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0187543_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187543_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187543_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187543_15	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187543_16	Structural annotation	NF010256	NA	NA
UHGV-0187543_18	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0187543_21	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0187543_21	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0187543_21	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0187543_21	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0187543_22	PHROG	phrog_1129	holin	lysis
UHGV-0187543_22	UniRef90	UniRef90_A0A6A8VHY5	Enolase	NA
UHGV-0187543_22	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0187543_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0187543_22	Structural annotation	PF06946	NA	NA
UHGV-0187543_23	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0187543_23	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0187543_24	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0187543_24	PHROG	phrog_14030	NA	unknown function
UHGV-0187543_24	UniRef90	UniRef90_A0A564WYC7	Peptidoglycan binding domain protein	NA
UHGV-0187543_24	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0187543_24	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0187543_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0187543_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0187543_24	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0187543_25	PHROG	phrog_30034	NA	unknown function
UHGV-0187543_25	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0187543_25	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0187543_28	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0187543_29	Structural annotation	PF00041, NF010681, COG3979	NA	NA
UHGV-0187543_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0187543_30	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0187543_30	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0187543_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0187543_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0187543_30	COG	COG4926	Phage-related protein	NA
UHGV-0187543_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0187543_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0187543_31	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0187543_31	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0187543_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0187543_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0187543_32	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0187543_32	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0187543_32	COG	COG5283	Phage-related tail protein	NA
UHGV-0187543_34	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0187543_35	PHROG	phrog_88	major tail protein	tail
UHGV-0187543_35	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0187543_35	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0187543_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0187543_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187543_36	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0187543_36	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0187543_37	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0187543_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187543_39	PHROG	phrog_2550	NA	unknown function
UHGV-0187543_39	eggNOG-mapper	588581.Cpap_1271	NA	NA
UHGV-0187543_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187543_40	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0187543_40	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0187543_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187543_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187543_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187543_41	KOfam	K06904	NA	NA
UHGV-0187543_41	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0187543_41	UniRef90	UniRef90_R5EAP6	Phage prohead protease HK97 family	NA
UHGV-0187543_41	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0187543_41	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0187543_41	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0187543_41	COG	COG3740	Phage head maturation protease	NA
UHGV-0187543_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0187543_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187543_42	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0187543_42	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0187543_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187543_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0187543_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187543_42	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0187543_43	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187543_43	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0187543_43	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0187543_43	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187543_43	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187543_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187543_43	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0187543_44	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0187543_44	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0187543_45	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187543_45	UniRef90	UniRef90_U4QWM3	HNH endonuclease	NA
UHGV-0187543_45	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0187543_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187543_45	Structural annotation	TIGR02646	NA	NA
UHGV-0187543_46	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0187543_46	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0187543_46	Structural annotation	PF14205	NA	NA
UHGV-0187543_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187543_47	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0187543_47	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0187543_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0187543_49	PHROG	phrog_27290	NA	unknown function
UHGV-0187543_49	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0187543_49	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0187543_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187543_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187543_49	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0187543_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0187543_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0187543_50	UniRef90	UniRef90_R5EEH2	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0187543_50	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0187543_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0187543_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0187543_50	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0187543_51	PHROG	phrog_27610	NA	unknown function
UHGV-0187543_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0187543_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0187543_53	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0187543_53	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0187543_53	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0187543_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0187543_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-0187543_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0187543_54	COG	COG3935	DNA replication protein DnaD	NA