UHGV-0187557

Genome information

Genome length 40,066 bps

CDS count 63

Completeness 91.94% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187557
vOTU ID	vOTU-071074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597331
BioSample	SAMN09781764
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.91
Jumbo phage	No

Genome content
Genome length	40,066 bps
GC content	55.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.78%
Average CDS length	593.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187557_1	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0187557_1	PHROG	phrog_4433	NA	unknown function
UHGV-0187557_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0187557_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0187557_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0187557_1	Structural annotation	NF007410	NA	NA
UHGV-0187557_3	Pfam	PF04448	NA	DUF551
UHGV-0187557_4	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0187557_5	Structural annotation	PF07453	NA	NA
UHGV-0187557_8	PHROG	phrog_14970	NA	unknown function
UHGV-0187557_8	UniRef90	UniRef90_UPI0011AF792D	Rad52/Rad22 family DNA repair protein	NA
UHGV-0187557_8	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0187557_8	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0187557_8	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0187557_8	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0187557_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0187557_9	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0187557_9	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0187557_9	Structural annotation	PF05772	NA	NA
UHGV-0187557_10	PHROG	phrog_7566	NA	unknown function
UHGV-0187557_10	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0187557_10	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0187557_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0187557_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0187557_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0187557_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187557_12	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0187557_12	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0187557_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0187557_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0187557_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0187557_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0187557_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0187557_13	PHROG	phrog_15768	NA	unknown function
UHGV-0187557_13	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0187557_13	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0187557_13	Pfam	PF19808	NA	DUF6291
UHGV-0187557_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187557_13	Structural annotation	PF19808	NA	NA
UHGV-0187557_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0187557_14	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187557_14	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0187557_14	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0187557_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0187557_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0187557_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0187557_16	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0187557_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0187557_16	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0187557_16	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0187557_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0187557_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0187557_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0187557_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0187557_16	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0187557_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0187557_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0187557_17	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0187557_17	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0187557_17	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0187557_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0187557_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187557_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0187557_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0187557_20	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0187557_20	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0187557_20	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0187557_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0187557_21	Structural annotation	NF007260	NA	NA
UHGV-0187557_22	PHROG	phrog_22543	NA	unknown function
UHGV-0187557_25	PHROG	phrog_1167	phosphofructokinase	other
UHGV-0187557_25	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0187557_25	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0187557_25	Pfam	PF19905	NA	DUF6378
UHGV-0187557_27	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0187557_27	Structural annotation	TIGR01636	NA	NA
UHGV-0187557_28	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0187557_28	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0187557_28	Structural annotation	PF13542	NA	NA
UHGV-0187557_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187557_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0187557_29	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0187557_29	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0187557_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0187557_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187557_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187557_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187557_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187557_31	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0187557_31	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0187557_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187557_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187557_33	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0187557_33	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0187557_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187557_33	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0187557_33	COG	COG2369	NA	NA
UHGV-0187557_33	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0187557_34	Structural annotation	PF07073, MF_01077, NF037951, COG4568	NA	NA
UHGV-0187557_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187557_35	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0187557_35	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0187557_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187557_35	Structural annotation	PF06810	NA	NA
UHGV-0187557_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0187557_36	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0187557_36	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0187557_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0187557_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187557_37	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0187557_38	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0187557_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187557_39	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-0187557_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0187557_39	Structural annotation	PF11114	NA	NA
UHGV-0187557_40	PHROG	phrog_3266	tail completion	connector
UHGV-0187557_40	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0187557_40	Structural annotation	PF20765	NA	NA
UHGV-0187557_41	PHROG	phrog_3099	NA	unknown function
UHGV-0187557_41	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0187557_41	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0187557_42	PHROG	phrog_11299	NA	unknown function
UHGV-0187557_42	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0187557_42	Structural annotation	PF10666	NA	NA
UHGV-0187557_43	PHROG	phrog_706	NA	unknown function
UHGV-0187557_43	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0187557_43	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0187557_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187557_43	Structural annotation	PF06854	NA	NA
UHGV-0187557_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0187557_44	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0187557_44	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0187557_44	COG	COG1511	NA	NA
UHGV-0187557_44	Structural annotation	PF16789, TIGR02473, COG2882	NA	NA
UHGV-0187557_45	PHROG	phrog_1194	NA	unknown function
UHGV-0187557_45	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0187557_45	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-0187557_45	Pfam	PF20458	NA	DUF6711
UHGV-0187557_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0187557_46	PHROG	phrog_6616	tail protein	tail
UHGV-0187557_46	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0187557_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0187557_47	PHROG	phrog_372	tail protein	tail
UHGV-0187557_47	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0187557_47	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0187557_47	Pfam	PF05895	NA	DUF859
UHGV-0187557_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0187557_47	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0187557_48	UniRef90	UniRef90_R7EKY5	Collagen triple helix repeat (20 copies)	NA
UHGV-0187557_48	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0187557_49	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0187557_49	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0187557_49	eggNOG-mapper	1125701.HMPREF1221_02095	Tyrosine phosphatase family	NA
UHGV-0187557_49	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0187557_49	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0187557_50	PHROG	phrog_199	holin	lysis
UHGV-0187557_50	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0187557_50	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0187557_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0187557_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0187557_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0187557_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0187557_51	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0187557_51	PHROG	phrog_35436	amidase	lysis
UHGV-0187557_51	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0187557_51	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0187557_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0187557_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0187557_51	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0187557_51	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0187557_52	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0187557_55	PHROG	phrog_22984	NA	unknown function
UHGV-0187557_56	PHROG	phrog_16490	NA	unknown function
UHGV-0187557_56	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0187557_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187557_58	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0187557_59	KOfam	K14059	int; integrase	NA
UHGV-0187557_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0187557_59	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0187557_59	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0187557_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187557_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0187557_59	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0187557_60	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0187557_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187557_60	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0187557_61	UniRef90	UniRef90_G9RRP2	HTH cro/C1-type domain-containing protein	NA
UHGV-0187557_61	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0187557_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187557_61	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0187557_62	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0187557_62	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187557_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187557_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0187557_63	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0187557_63	Structural annotation	PF11112, COG3311	NA	NA