UHGV-0187712

Genome information

Genome length 60,787 bps

CDS count 97

Completeness 97.37% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187712
vOTU ID	vOTU-064479
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594519
BioSample	SAMN09781772
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.21
Jumbo phage	No

Genome content
Genome length	60,787 bps
GC content	46.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	97
CDS density	92.32%
Average CDS length	580.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187712_1	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187712_1	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-0187712_2	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0187712_2	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0187712_2	eggNOG-mapper	665950.HMPREF1025_01991	NA	NA
UHGV-0187712_3	PHROG	phrog_32444	NA	unknown function
UHGV-0187712_3	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0187712_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187712_4	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-0187712_4	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0187712_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187712_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187712_4	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0187712_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187712_6	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0187712_6	eggNOG-mapper	742733.HMPREF9469_05032	Phage portal protein	NA
UHGV-0187712_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187712_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187712_7	KOfam	K06904	NA	NA
UHGV-0187712_7	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0187712_7	UniRef90	UniRef90_D4N0R6	Phage capsid family./Caudovirus prohead protease	NA
UHGV-0187712_7	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0187712_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0187712_7	Pfam	PF13694	Sec63/Sec62 complex-interacting family	Hph
UHGV-0187712_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187712_7	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0187712_8	PHROG	phrog_4270	NA	unknown function
UHGV-0187712_8	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0187712_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0187712_9	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0187712_9	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0187712_9	Structural annotation	PF20765	NA	NA
UHGV-0187712_10	PHROG	phrog_2645	major tail protein	tail
UHGV-0187712_10	UniRef90	UniRef90_A0A649V712	Minor tail protein	NA
UHGV-0187712_10	eggNOG-mapper	411460.RUMTOR_01342	NA	NA
UHGV-0187712_10	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0187712_11	PHROG	phrog_4282	NA	unknown function
UHGV-0187712_11	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0187712_12	PHROG	phrog_4338	NA	unknown function
UHGV-0187712_12	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0187712_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0187712_13	PHROG	phrog_291	endolysin	lysis
UHGV-0187712_13	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0187712_13	eggNOG-mapper	665956.HMPREF1032_03921	NA	NA
UHGV-0187712_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0187712_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0187712_13	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0187712_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187712_14	UniRef90	UniRef90_UPI0018A05088	HK97 gp10 family phage protein	NA
UHGV-0187712_14	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-0187712_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0187712_14	Structural annotation	TIGR01725	NA	NA
UHGV-0187712_15	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0187712_15	UniRef90	UniRef90_A0A3A9ITG5	Phage tail tape measure protein	NA
UHGV-0187712_15	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-0187712_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0187712_15	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0187712_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0187712_15	COG	COG5412	Phage-related protein	NA
UHGV-0187712_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0187712_16	UniRef90	UniRef90_UPI0011DCCBB1	phage tail family protein	NA
UHGV-0187712_16	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0187712_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0187712_16	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0187712_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0187712_17	UniRef90	UniRef90_UPI0011DE0073	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0187712_17	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0187712_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0187712_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0187712_18	PHROG	phrog_1220	head protein	head and packaging
UHGV-0187712_18	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0187712_18	eggNOG-mapper	428125.CLOLEP_01425	COG NOG18825 non supervised orthologous group	NA
UHGV-0187712_18	Structural annotation	PF20747	NA	NA
UHGV-0187712_19	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0187712_19	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0187712_19	Pfam	PF19789	NA	DUF6273
UHGV-0187712_19	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0187712_19	Structural annotation	PF19789, PF03785	NA	NA
UHGV-0187712_21	PHROG	phrog_134	NA	unknown function
UHGV-0187712_21	UniRef90	UniRef90_A0A7T2CRE1	XkdX family protein	NA
UHGV-0187712_21	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0187712_21	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0187712_21	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0187712_22	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0187712_22	Structural annotation	NF033819	NA	NA
UHGV-0187712_23	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0187712_24	PHROG	phrog_13589	NA	unknown function
UHGV-0187712_24	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0187712_24	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0187712_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0187712_26	PHROG	phrog_19111	NA	unknown function
UHGV-0187712_26	eggNOG-mapper	1235793.C809_02474	nuclear chromosome segregation	NA
UHGV-0187712_26	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0187712_27	Structural annotation	PF20328, NF033679, COG4935	NA	NA
UHGV-0187712_28	PHROG	phrog_38190	NA	unknown function
UHGV-0187712_28	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0187712_30	PHROG	phrog_16490	NA	unknown function
UHGV-0187712_30	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0187712_31	PHROG	phrog_20016	NA	unknown function
UHGV-0187712_31	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0187712_33	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0187712_34	PHROG	phrog_4105	NA	unknown function
UHGV-0187712_34	UniRef90	UniRef90_A0A7M4BNX2	Phage holin	NA
UHGV-0187712_34	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0187712_35	PHROG	phrog_881	holin	lysis
UHGV-0187712_35	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0187712_35	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0187712_35	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0187712_35	Structural annotation	PF16938	NA	NA
UHGV-0187712_36	KOfam	K14059	int; integrase	NA
UHGV-0187712_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0187712_36	UniRef90	UniRef90_A0A898FVV0	Tyrosine-type recombinase/integrase	NA
UHGV-0187712_36	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0187712_36	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187712_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187712_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187712_36	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0187712_37	PHROG	phrog_6058	NA	unknown function
UHGV-0187712_37	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0187712_37	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0187712_38	PHROG	phrog_11237	NA	unknown function
UHGV-0187712_38	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0187712_42	eggNOG-mapper	665956.HMPREF1032_00626	NA	NA
UHGV-0187712_43	PHROG	phrog_15866	NA	unknown function
UHGV-0187712_44	Pfam	PF20234	NA	DUF6591
UHGV-0187712_44	Structural annotation	PF20234, PF09624	NA	NA
UHGV-0187712_49	PHROG	phrog_2152	NA	unknown function
UHGV-0187712_49	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0187712_49	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0187712_49	Pfam	PF19880	NA	DUF6353
UHGV-0187712_49	Structural annotation	PF19880	NA	NA
UHGV-0187712_54	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0187712_55	PHROG	phrog_2152	NA	unknown function
UHGV-0187712_55	UniRef90	UniRef90_UPI0019566411	NA	NA
UHGV-0187712_55	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-0187712_55	Pfam	PF19880	NA	DUF6353
UHGV-0187712_55	Structural annotation	PF19880	NA	NA
UHGV-0187712_57	eggNOG-mapper	1453496.AT03_13425	NA	NA
UHGV-0187712_59	PHROG	phrog_15567	NA	unknown function
UHGV-0187712_59	eggNOG-mapper	478749.BRYFOR_08567	NA	NA
UHGV-0187712_60	PHROG	phrog_4079	NA	unknown function
UHGV-0187712_60	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0187712_61	PHROG	phrog_1485	NA	unknown function
UHGV-0187712_61	UniRef90	UniRef90_A0A1U7M493	NA	NA
UHGV-0187712_61	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-0187712_61	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0187712_61	Structural annotation	PF07659	NA	NA
UHGV-0187712_62	PHROG	phrog_2152	NA	unknown function
UHGV-0187712_62	UniRef90	UniRef90_UPI00156DA7B3	NA	NA
UHGV-0187712_62	eggNOG-mapper	411460.RUMTOR_02029	NA	NA
UHGV-0187712_62	Pfam	PF19880	NA	DUF6353
UHGV-0187712_62	Structural annotation	PF19880	NA	NA
UHGV-0187712_64	PHROG	phrog_14968	NA	unknown function
UHGV-0187712_64	UniRef90	UniRef90_A0A3A9JBK4	Histidine kinase	NA
UHGV-0187712_64	eggNOG-mapper	411460.RUMTOR_02031	NA	NA
UHGV-0187712_65	PHROG	phrog_4695	NA	unknown function
UHGV-0187712_65	eggNOG-mapper	742733.HMPREF9469_05070	NA	NA
UHGV-0187712_66	PHROG	phrog_4678	NA	unknown function
UHGV-0187712_66	eggNOG-mapper	411460.RUMTOR_02033	NA	NA
UHGV-0187712_68	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0187712_68	UniRef90	UniRef90_A0A372V5Y1	SF3 helicase domain-containing protein	NA
UHGV-0187712_68	eggNOG-mapper	665956.HMPREF1032_00647	DNA polymerase type-B family	NA
UHGV-0187712_68	Pfam	PF19263	NA	DUF5906
UHGV-0187712_68	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0187712_69	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0187712_69	eggNOG-mapper	742733.HMPREF9469_05065	NA	NA
UHGV-0187712_69	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0187712_71	UniRef90	UniRef90_A0A076PE73	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0187712_71	eggNOG-mapper	443144.GM21_0785	NA	NA
UHGV-0187712_76	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0187712_76	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0187712_76	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-0187712_76	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0187712_76	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0187712_81	PHROG	phrog_19852	NA	unknown function
UHGV-0187712_81	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0187712_86	PHROG	phrog_6721	NA	unknown function
UHGV-0187712_86	eggNOG-mapper	665950.HMPREF1025_01974	NA	NA
UHGV-0187712_86	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0187712_93	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187712_93	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0187712_93	UniRef90	UniRef90_A0A396PA13	XRE family transcriptional regulator	NA
UHGV-0187712_93	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187712_93	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0187712_93	Structural annotation	PF01381, PF15911, MF_00535, NF041951, COG3655	NA	NA
UHGV-0187712_94	Structural annotation	PF09297	NA	NA
UHGV-0187712_95	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187712_95	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0187712_95	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0187712_96	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187712_96	UniRef90	UniRef90_A0A7X4ZPH9	NA	NA
UHGV-0187712_96	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0187712_96	Pfam	PF10926	NA	DUF2800
UHGV-0187712_96	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0187712_97	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0187712_97	UniRef90	UniRef90_A0A3A9IVX2	Helix-turn-helix domain-containing protein	NA
UHGV-0187712_97	eggNOG-mapper	428125.CLOLEP_01400	Bacterial regulatory proteins, luxR family	NA
UHGV-0187712_97	Structural annotation	PF05183	NA	NA