UHGV-0187713

Genome information

Genome length 57,238 bps

CDS count 104

Completeness 99.37% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187713
vOTU ID	vOTU-064478
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594520
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.68
Jumbo phage	No

Genome content
Genome length	57,238 bps
GC content	48.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	104
CDS density	84.58%
Average CDS length	468.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187713_2	Structural annotation	PF10735, COG4483	NA	NA
UHGV-0187713_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187713_3	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-0187713_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0187713_7	Structural annotation	MF_01553, NF010188, COG5503	NA	NA
UHGV-0187713_9	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0187713_9	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0187713_9	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0187713_10	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0187713_10	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0187713_10	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-0187713_10	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0187713_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0187713_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187713_10	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0187713_11	Structural annotation	NF009949	NA	NA
UHGV-0187713_13	Structural annotation	NF009949	NA	NA
UHGV-0187713_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0187713_15	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0187713_15	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0187713_15	COG	COG5410	NA	NA
UHGV-0187713_15	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0187713_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0187713_18	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0187713_18	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0187713_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187713_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0187713_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0187713_22	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0187713_22	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0187713_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0187713_22	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0187713_23	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0187713_23	Structural annotation	TIGR01560	NA	NA
UHGV-0187713_24	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0187713_24	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0187713_25	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0187713_26	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0187713_27	PHROG	phrog_158	major tail protein	tail
UHGV-0187713_27	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0187713_27	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0187713_28	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0187713_28	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0187713_28	Pfam	PF16478	NA	DUF5055
UHGV-0187713_28	Structural annotation	PF16478	NA	NA
UHGV-0187713_29	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0187713_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0187713_30	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0187713_30	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0187713_31	PHROG	phrog_1194	NA	unknown function
UHGV-0187713_31	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0187713_31	Pfam	PF20458	NA	DUF6711
UHGV-0187713_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0187713_32	PHROG	phrog_13879	NA	unknown function
UHGV-0187713_32	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0187713_32	Pfam	PF19789	NA	DUF6273
UHGV-0187713_32	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0187713_33	PHROG	phrog_18725	NA	unknown function
UHGV-0187713_33	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0187713_34	PHROG	phrog_9534	head protein	head and packaging
UHGV-0187713_34	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0187713_34	COG	COG5492	NA	NA
UHGV-0187713_36	PHROG	phrog_1382	NA	unknown function
UHGV-0187713_36	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0187713_37	KOfam	K07273	acm; lysozyme	NA
UHGV-0187713_37	PHROG	phrog_291	endolysin	lysis
UHGV-0187713_37	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0187713_37	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0187713_37	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0187713_37	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0187713_37	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0187713_39	PHROG	phrog_15303	NA	unknown function
UHGV-0187713_39	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0187713_40	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0187713_40	Structural annotation	PF10651	NA	NA
UHGV-0187713_41	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0187713_41	PHROG	phrog_17587	tail fiber protein	tail
UHGV-0187713_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0187713_42	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0187713_42	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0187713_46	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0187713_46	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0187713_49	PHROG	phrog_21718	NA	unknown function
UHGV-0187713_51	PHROG	phrog_16490	NA	unknown function
UHGV-0187713_51	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0187713_52	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0187713_53	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0187713_54	Structural annotation	NF010188	NA	NA
UHGV-0187713_56	Structural annotation	PF07878	NA	NA
UHGV-0187713_58	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0187713_58	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0187713_58	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0187713_58	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0187713_58	Pfam	PF13614	AAA domain	AAA_31
UHGV-0187713_58	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0187713_58	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0187713_59	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187713_59	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0187713_59	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0187713_59	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0187713_59	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0187713_59	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0187713_59	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0187713_60	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0187713_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187713_60	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0187713_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187713_64	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0187713_64	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0187713_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187713_64	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0187713_64	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0187713_65	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0187713_65	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0187713_65	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0187713_65	Structural annotation	TIGR03070	NA	NA
UHGV-0187713_66	Structural annotation	PF10922	NA	NA
UHGV-0187713_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187713_69	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0187713_70	Structural annotation	PF14143	NA	NA
UHGV-0187713_72	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0187713_72	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0187713_72	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0187713_72	Pfam	PF13479	AAA domain	AAA_24
UHGV-0187713_72	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0187713_73	PHROG	phrog_18107	NA	unknown function
UHGV-0187713_73	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0187713_73	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0187713_73	Structural annotation	PF05037	NA	NA
UHGV-0187713_74	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0187713_74	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0187713_74	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0187713_74	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187713_74	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0187713_77	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187713_77	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0187713_77	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0187713_77	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0187713_79	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0187713_82	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0187713_82	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0187713_82	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0187713_82	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0187713_82	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0187713_82	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0187713_82	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0187713_82	Structural annotation	PF01507, MF_00064, TIGR02039, COG0175	NA	NA
UHGV-0187713_83	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0187713_85	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0187713_87	Structural annotation	PF16677	NA	NA
UHGV-0187713_89	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0187713_89	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0187713_89	UniRef90	UniRef90_UPI001F153C47	recombinase family protein	NA
UHGV-0187713_89	eggNOG-mapper	1298920.KI911353_gene4158	NA	NA
UHGV-0187713_89	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0187713_89	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187713_90	eggNOG-mapper	1408437.JNJN01000054_gene2097	Resolvase, N terminal domain	NA
UHGV-0187713_90	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0187713_90	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187713_91	KOfam	K13655	mqsA; HTH-type transcriptional regulator / antitoxin MqsA	NA
UHGV-0187713_91	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0187713_91	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187713_92	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0187713_92	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0187713_92	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0187713_92	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0187713_102	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0187713_102	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0187713_102	Pfam	PF19808	NA	DUF6291
UHGV-0187713_102	Structural annotation	PF19808	NA	NA
UHGV-0187713_103	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0187713_103	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0187713_103	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0187713_103	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0187713_103	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0187713_103	COG	COG0305	Replicative DNA helicase	NA
UHGV-0187713_103	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA