UHGV-0187733

Genome information

Genome length 33,382 bps

CDS count 47

Completeness 89.20% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187733
vOTU ID	vOTU-029719
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597636
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.06
Jumbo phage	No

Genome content
Genome length	33,382 bps
GC content	60.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.10%
Average CDS length	658.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187733_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0187733_1	eggNOG-mapper	1234664.AMRO01000024_gene1803	Phage terminase, small subunit	NA
UHGV-0187733_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0187733_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0187733_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0187733_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187733_2	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0187733_2	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0187733_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187733_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187733_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187733_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0187733_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187733_4	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0187733_4	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0187733_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187733_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0187733_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187733_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187733_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0187733_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0187733_5	UniRef90	UniRef90_A0A3D4EJM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0187733_5	eggNOG-mapper	1154860.SAG0136_08085	Belongs to the peptidase S14 family	NA
UHGV-0187733_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0187733_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0187733_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0187733_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187733_6	UniRef90	UniRef90_A0A3D4EJL4	Phage major capsid protein	NA
UHGV-0187733_6	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-0187733_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187733_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187733_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187733_6	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187733_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0187733_7	UniRef90	UniRef90_A0A8J6JAY9	Phage gp6-like head-tail connector protein	NA
UHGV-0187733_7	eggNOG-mapper	861450.HMPREF0080_02048	Phage gp6-like head-tail connector protein	NA
UHGV-0187733_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0187733_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0187733_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0187733_8	UniRef90	UniRef90_UPI000E5723F8	phage head closure protein	NA
UHGV-0187733_8	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0187733_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0187733_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0187733_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0187733_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187733_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187733_9	UniRef90	UniRef90_UPI000476ED54	HK97 gp10 family phage protein	NA
UHGV-0187733_9	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0187733_10	Structural annotation	PF12691	NA	NA
UHGV-0187733_11	PHROG	phrog_158	major tail protein	tail
UHGV-0187733_11	UniRef90	UniRef90_A0A831TIM5	Histidine kinase	NA
UHGV-0187733_11	eggNOG-mapper	1536773.R70331_25690	Phage tail tube protein	NA
UHGV-0187733_11	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0187733_11	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0187733_12	PHROG	phrog_34587	NA	unknown function
UHGV-0187733_12	Structural annotation	PF11836	NA	NA
UHGV-0187733_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0187733_14	UniRef90	UniRef90_A0A1G9R278	Phage-related protein	NA
UHGV-0187733_14	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0187733_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0187733_15	PHROG	phrog_1194	NA	unknown function
UHGV-0187733_15	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0187733_15	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0187733_15	Pfam	PF20458	NA	DUF6711
UHGV-0187733_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0187733_16	PHROG	phrog_6616	tail protein	tail
UHGV-0187733_16	eggNOG-mapper	1507.HMPREF0262_01189	Phage minor structural protein	NA
UHGV-0187733_16	COG	COG4926	Phage-related protein	NA
UHGV-0187733_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0187733_17	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0187733_17	Structural annotation	PF20377	NA	NA
UHGV-0187733_18	UniRef90	UniRef90_E0S2M2	Peptidase_C39_2 domain-containing protein	NA
UHGV-0187733_18	eggNOG-mapper	515622.bpr_I1251	Peptidase_C39 like family	NA
UHGV-0187733_18	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0187733_19	Structural annotation	PF21683	NA	NA
UHGV-0187733_23	PHROG	phrog_4105	NA	unknown function
UHGV-0187733_23	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0187733_23	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0187733_24	PHROG	phrog_881	holin	lysis
UHGV-0187733_24	UniRef90	UniRef90_A0A843HKU1	Phage holin	NA
UHGV-0187733_24	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0187733_24	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0187733_24	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0187733_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0187733_25	PHROG	phrog_435	endolysin	lysis
UHGV-0187733_25	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0187733_25	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0187733_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0187733_25	Pfam	PF05036	SPOR domain	SPOR
UHGV-0187733_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0187733_25	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0187733_26	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0187733_28	PHROG	phrog_22984	NA	unknown function
UHGV-0187733_29	PHROG	phrog_16490	NA	unknown function
UHGV-0187733_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0187733_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187733_31	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0187733_32	KOfam	K14059	int; integrase	NA
UHGV-0187733_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0187733_32	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0187733_32	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0187733_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187733_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187733_32	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0187733_33	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0187733_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187733_33	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0187733_34	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0187733_34	PHROG	phrog_8049	NA	unknown function
UHGV-0187733_34	eggNOG-mapper	927704.SELR_26510	NA	NA
UHGV-0187733_35	PHROG	phrog_10292	NA	unknown function
UHGV-0187733_35	UniRef90	UniRef90_A0A6N9PTJ0	TM2 domain-containing protein	NA
UHGV-0187733_35	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0187733_35	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0187733_35	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187733_35	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0187733_35	Pfam	PF05154	TM2 domain	TM2
UHGV-0187733_35	COG	COG2314	NA	NA
UHGV-0187733_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187733_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187733_36	eggNOG-mapper	742738.HMPREF9460_00844	Transcriptional	NA
UHGV-0187733_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187733_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187733_36	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0187733_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187733_37	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0187733_37	UniRef90	UniRef90_UPI0005E56401	helix-turn-helix domain-containing protein	NA
UHGV-0187733_37	eggNOG-mapper	349520.PPE_01139	Transcriptional regulator	NA
UHGV-0187733_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187733_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187733_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0187733_39	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0187733_39	UniRef90	UniRef90_A0A1Y4UUM6	DNA-binding protein	NA
UHGV-0187733_39	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187733_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187733_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0187733_39	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0187733_40	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0187733_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187733_42	UniRef90	UniRef90_UPI00195D2180	helix-turn-helix domain-containing protein	NA
UHGV-0187733_42	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0187733_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0187733_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187733_42	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0187733_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0187733_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0187733_43	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0187733_43	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0187733_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0187733_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0187733_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0187733_43	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0187733_44	Structural annotation	COG2139	NA	NA
UHGV-0187733_45	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0187733_45	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0187733_45	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0187733_45	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0187733_45	Pfam	PF13614	AAA domain	AAA_31
UHGV-0187733_45	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0187733_45	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0187733_47	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0187733_47	PHROG	phrog_27290	NA	unknown function
UHGV-0187733_47	UniRef90	UniRef90_UPI00195D8AEB	ParB N-terminal domain-containing protein	NA
UHGV-0187733_47	eggNOG-mapper	1145276.T479_20105	NA	NA
UHGV-0187733_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187733_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA