UHGV-0187772

Genome information

Genome length 33,399 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187772
vOTU ID	vOTU-007234
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596307
BioSample	SAMN09781786
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.66
Jumbo phage	No

Genome content
Genome length	33,399 bps
GC content	46.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.84%
Average CDS length	588.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187772_1	PHROG	phrog_3136	NA	unknown function
UHGV-0187772_1	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0187772_1	Structural annotation	PF04033, COG4933	NA	NA
UHGV-0187772_3	Structural annotation	TIGR01636	NA	NA
UHGV-0187772_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187772_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0187772_5	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-0187772_5	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0187772_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0187772_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0187772_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187772_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187772_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0187772_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187772_6	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-0187772_6	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0187772_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187772_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187772_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187772_7	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-0187772_7	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-0187772_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187772_7	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0187772_7	COG	COG2369	NA	NA
UHGV-0187772_7	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0187772_8	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-0187772_9	PHROG	phrog_419	NA	unknown function
UHGV-0187772_9	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-0187772_9	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0187772_9	Structural annotation	PF14083	NA	NA
UHGV-0187772_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187772_10	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-0187772_10	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0187772_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187772_10	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0187772_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0187772_11	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0187772_11	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0187772_11	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0187772_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187772_12	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0187772_13	Pfam	PF20536	NA	DUF6751
UHGV-0187772_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0187772_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187772_14	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-0187772_14	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0187772_14	Structural annotation	PF11114	NA	NA
UHGV-0187772_15	PHROG	phrog_3266	tail completion	connector
UHGV-0187772_16	PHROG	phrog_3099	NA	unknown function
UHGV-0187772_16	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0187772_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0187772_18	PHROG	phrog_706	NA	unknown function
UHGV-0187772_18	UniRef90	UniRef90_A0A1C6GGT7	Bacteriophage Gp15 protein	NA
UHGV-0187772_18	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-0187772_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187772_18	Structural annotation	PF06854	NA	NA
UHGV-0187772_19	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0187772_19	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0187772_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0187772_20	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0187772_21	Structural annotation	PF05954, NF033848, COG4379	NA	NA
UHGV-0187772_23	Structural annotation	PF21621	NA	NA
UHGV-0187772_26	PHROG	phrog_199	holin	lysis
UHGV-0187772_26	UniRef90	UniRef90_A0A351TJT2	Holin	NA
UHGV-0187772_26	eggNOG-mapper	357809.Cphy_1930	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0187772_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0187772_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0187772_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0187772_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0187772_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0187772_27	PHROG	phrog_6219	endolysin	lysis
UHGV-0187772_27	UniRef90	UniRef90_A0A1C6GH19	Autolytic lysozyme	NA
UHGV-0187772_27	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0187772_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0187772_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0187772_27	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-0187772_28	KOfam	K14059	int; integrase	NA
UHGV-0187772_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0187772_28	UniRef90	UniRef90_R7KSI7	Putative integrase	NA
UHGV-0187772_28	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0187772_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187772_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187772_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187772_28	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0187772_30	PHROG	phrog_1847	NA	unknown function
UHGV-0187772_30	UniRef90	UniRef90_A0A3D1SDG7	T5orf172 domain-containing protein	NA
UHGV-0187772_30	eggNOG-mapper	411471.SUBVAR_05139	T5orf172	NA
UHGV-0187772_30	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0187772_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0187772_30	Structural annotation	PF19962	NA	NA
UHGV-0187772_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0187772_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0187772_31	UniRef90	UniRef90_D4LDS3	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0187772_31	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0187772_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187772_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0187772_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0187772_31	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0187772_32	UniRef90	UniRef90_A0A3D4T7E0	XRE family transcriptional regulator	NA
UHGV-0187772_32	eggNOG-mapper	596329.HMPREF0631_1345	NA	NA
UHGV-0187772_32	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0187772_34	PHROG	phrog_8600	NA	unknown function
UHGV-0187772_34	UniRef90	UniRef90_A0A843BCG1	YozE_SAM_like domain-containing protein	NA
UHGV-0187772_34	eggNOG-mapper	1235793.C809_04351	YozE SAM-like fold	NA
UHGV-0187772_34	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0187772_34	Structural annotation	PF06855, MF_01538, NF010193, COG4479	NA	NA
UHGV-0187772_36	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0187772_37	Structural annotation	MF_00273	NA	NA
UHGV-0187772_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0187772_40	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0187772_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0187772_40	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0187772_45	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0187772_45	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0187772_45	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0187772_45	Pfam	PF13479	AAA domain	AAA_24
UHGV-0187772_45	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0187772_47	PHROG	phrog_18107	NA	unknown function
UHGV-0187772_47	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0187772_47	Structural annotation	PF05037	NA	NA
UHGV-0187772_48	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0187772_48	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0187772_48	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0187772_48	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0187772_48	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0187772_48	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0187772_49	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0187772_49	UniRef90	UniRef90_A0A1V5XFC1	Virulence-associated protein E	NA
UHGV-0187772_49	eggNOG-mapper	1235793.C809_02292	Virulence-associated protein E	NA
UHGV-0187772_49	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0187772_49	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0187772_49	Structural annotation	PF05272, MF_00016, NF005477, COG5545	NA	NA
UHGV-0187772_51	Structural annotation	PF11483	NA	NA
UHGV-0187772_53	PHROG	phrog_3136	NA	unknown function
UHGV-0187772_53	Pfam	PF04266	ASCH domain	ASCH
UHGV-0187772_53	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA