UHGV-0187802

Genome information

Genome length 30,772 bps

CDS count 47

Completeness 65.37% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187802
vOTU ID	vOTU-029724
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595985
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.42
Jumbo phage	No

Genome content
Genome length	30,772 bps
GC content	51.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.70%
Average CDS length	598.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187802_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0187802_2	UniRef90	UniRef90_A0A6L5Y0Q6	Siphovirus Gp157 family protein	NA
UHGV-0187802_2	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0187802_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0187802_2	Structural annotation	PF05565	NA	NA
UHGV-0187802_3	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187802_3	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0187802_3	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0187802_3	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0187802_4	PHROG	phrog_398	NA	unknown function
UHGV-0187802_4	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-0187802_4	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0187802_4	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0187802_4	Structural annotation	PF16784	NA	NA
UHGV-0187802_5	UniRef90	UniRef90_A0A845MWS0	Helix-turn-helix domain-containing protein	NA
UHGV-0187802_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0187802_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0187802_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187802_6	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0187802_6	eggNOG-mapper	1519439.JPJG01000051_gene721	Single-strand binding protein family	NA
UHGV-0187802_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0187802_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0187802_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0187802_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0187802_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0187802_7	PHROG	phrog_16304	NA	unknown function
UHGV-0187802_7	UniRef90	UniRef90_UPI0011C21CE6	NA	NA
UHGV-0187802_7	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA
UHGV-0187802_7	Pfam	PF19808	NA	DUF6291
UHGV-0187802_7	Structural annotation	PF19808	NA	NA
UHGV-0187802_8	PHROG	phrog_9804	NA	unknown function
UHGV-0187802_8	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0187802_8	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0187802_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0187802_8	Structural annotation	PF11417	NA	NA
UHGV-0187802_9	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187802_9	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0187802_9	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0187802_9	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0187802_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0187802_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0187802_10	UniRef90	UniRef90_A0A316S792	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0187802_10	eggNOG-mapper	568816.Acin_1351	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0187802_10	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0187802_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0187802_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0187802_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187802_10	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0187802_11	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0187802_11	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0187802_11	UniRef90	UniRef90_A0A3L7S6W5	dCTP deaminase, dUMP-forming	NA
UHGV-0187802_11	eggNOG-mapper	1123274.KB899407_gene365	Belongs to the dCTP deaminase family	NA
UHGV-0187802_11	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0187802_11	COG	COG0717	dCTP deaminase	NA
UHGV-0187802_11	HAMAP	MF_00146	dCTP deaminase, dUMP-forming [dcd]	NA
UHGV-0187802_11	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0187802_12	PHROG	phrog_7839	NA	unknown function
UHGV-0187802_12	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0187802_12	Structural annotation	PF08860	NA	NA
UHGV-0187802_14	PHROG	phrog_924	NA	unknown function
UHGV-0187802_14	UniRef90	UniRef90_A0A6C0R0N0	NA	NA
UHGV-0187802_14	Pfam	PF04448	NA	DUF551
UHGV-0187802_14	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0187802_15	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0187802_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187802_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0187802_16	UniRef90	UniRef90_A0A7X5DY03	DNA cytosine methyltransferase	NA
UHGV-0187802_16	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0187802_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187802_20	PHROG	phrog_474	phosphofructokinase	other
UHGV-0187802_20	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-0187802_20	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-0187802_20	Pfam	PF19905	NA	DUF6378
UHGV-0187802_20	Structural annotation	PF19905	NA	NA
UHGV-0187802_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0187802_21	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0187802_21	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0187802_21	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0187802_22	PHROG	phrog_6721	NA	unknown function
UHGV-0187802_22	eggNOG-mapper	679192.HMPREF9013_1123	NA	NA
UHGV-0187802_22	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0187802_24	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0187802_24	UniRef90	UniRef90_R7QWE6	HTH_30 domain-containing protein	NA
UHGV-0187802_24	eggNOG-mapper	1280685.AUKC01000019_gene338	PucR C-terminal helix-turn-helix domain	NA
UHGV-0187802_24	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0187802_24	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0187802_24	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0187802_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0187802_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0187802_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0187802_26	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0187802_26	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0187802_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0187802_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0187802_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0187802_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187802_27	PHROG	phrog_10250	NA	unknown function
UHGV-0187802_27	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0187802_27	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0187802_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0187802_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187802_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187802_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187802_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187802_28	UniRef90	UniRef90_A0A2Z4QBJ4	Portal protein	NA
UHGV-0187802_28	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0187802_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187802_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187802_29	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-0187802_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0187802_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187802_29	COG	COG2369	NA	NA
UHGV-0187802_29	Structural annotation	PF06152	NA	NA
UHGV-0187802_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187802_32	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0187802_32	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0187802_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187802_32	Structural annotation	PF06810	NA	NA
UHGV-0187802_33	PHROG	phrog_909	major head protein	head and packaging
UHGV-0187802_33	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0187802_34	PHROG	phrog_29	major head protein	head and packaging
UHGV-0187802_34	UniRef90	UniRef90_UPI000CDB6260	major capsid protein	NA
UHGV-0187802_34	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0187802_34	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0187802_34	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0187802_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187802_35	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0187802_36	PHROG	phrog_3366	NA	unknown function
UHGV-0187802_36	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0187802_36	Structural annotation	PF20536	NA	NA
UHGV-0187802_37	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187802_37	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-0187802_37	eggNOG-mapper	1589270.A0A0B5A5V6_9CAUD	endonuclease activity	NA
UHGV-0187802_37	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0187802_37	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0187802_37	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0187802_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187802_38	UniRef90	UniRef90_UPI00137AF39D	minor capsid protein	NA
UHGV-0187802_38	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0187802_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0187802_38	Structural annotation	PF11114	NA	NA
UHGV-0187802_39	PHROG	phrog_3266	tail completion	connector
UHGV-0187802_39	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0187802_39	Structural annotation	PF12691	NA	NA
UHGV-0187802_40	PHROG	phrog_820	major tail protein	tail
UHGV-0187802_40	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0187802_40	eggNOG-mapper	663278.Ethha_0099	NA	NA
UHGV-0187802_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0187802_41	PHROG	phrog_4450	NA	unknown function
UHGV-0187802_41	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0187802_41	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0187802_41	Pfam	PF20378	NA	DUF6673
UHGV-0187802_41	Structural annotation	PF20378	NA	NA
UHGV-0187802_42	PHROG	phrog_706	NA	unknown function
UHGV-0187802_42	UniRef90	UniRef90_UPI0013DE0285	Gp15 family bacteriophage protein	NA
UHGV-0187802_42	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0187802_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187802_42	Structural annotation	PF06854	NA	NA
UHGV-0187802_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0187802_43	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0187802_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0187802_43	Structural annotation	COG5280	NA	NA
UHGV-0187802_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0187802_44	eggNOG-mapper	742742.HMPREF9452_00386	Phage tail tape measure protein TP901	NA
UHGV-0187802_44	COG	COG5412	Phage-related protein	NA
UHGV-0187802_44	Structural annotation	COG1340	NA	NA
UHGV-0187802_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0187802_46	PHROG	phrog_13879	NA	unknown function
UHGV-0187802_46	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-0187802_46	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0187802_47	PHROG	phrog_18725	NA	unknown function
UHGV-0187802_47	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA