UHGV-0187888

Genome information

Genome length 23,415 bps

CDS count 25

Completeness 55.64% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187888
vOTU ID	vOTU-022842
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580229_a1_ct27840_vs1@Siphoviridae__sp._ctUBK1
BioSample	SAMEA2580229
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.79
Jumbo phage	No

Genome content
Genome length	23,415 bps
GC content	44.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	90.41%
Average CDS length	847.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187888_1	KOfam	K19091	cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]	NA
UHGV-0187888_1	UniRef90	UniRef90_R6QN34	CRISPR-associated endoribonuclease Cas6	NA
UHGV-0187888_1	eggNOG-mapper	411490.ANACAC_00046	CRISPR associated protein Cas6	NA
UHGV-0187888_1	PADLOC	Cas6b_WP_072896889.1	NA	CRISPR-CAS
UHGV-0187888_1	COG	COG1583	CRISPR/Cas system endoribonuclease Cas6, RAMP superfamily	NA
UHGV-0187888_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0187888_2	PHROG	phrog_670	endolysin	lysis
UHGV-0187888_2	UniRef90	UniRef90_R6QCJ8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0187888_2	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0187888_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0187888_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0187888_2	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0187888_3	PHROG	phrog_1129	holin	lysis
UHGV-0187888_3	UniRef90	UniRef90_UPI00040FA29A	phage holin family protein	NA
UHGV-0187888_3	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0187888_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0187888_3	Structural annotation	PF06946	NA	NA
UHGV-0187888_4	UniRef90	UniRef90_A0A4R4FF68	CTP synthase	NA
UHGV-0187888_4	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0187888_5	PHROG	phrog_2566	NA	unknown function
UHGV-0187888_5	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0187888_6	PHROG	phrog_24267	NA	unknown function
UHGV-0187888_6	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-0187888_6	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-0187888_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0187888_7	PHROG	phrog_3558	tail protein	tail
UHGV-0187888_7	UniRef90	UniRef90_A0A374AHI5	Prophage_tail domain-containing protein	NA
UHGV-0187888_7	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0187888_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0187888_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0187888_7	COG	COG4926	Phage-related protein	NA
UHGV-0187888_7	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0187888_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0187888_8	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0187888_8	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0187888_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0187888_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0187888_8	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0187888_9	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0187888_9	UniRef90	UniRef90_A0A374AGJ9	Phage tail tape measure protein	NA
UHGV-0187888_9	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0187888_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0187888_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0187888_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0187888_9	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0187888_10	PHROG	phrog_706	NA	unknown function
UHGV-0187888_10	UniRef90	UniRef90_B0MAY5	Bacteriophage Gp15 protein	NA
UHGV-0187888_10	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0187888_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187888_10	Structural annotation	PF06854	NA	NA
UHGV-0187888_11	PHROG	phrog_4450	NA	unknown function
UHGV-0187888_11	eggNOG-mapper	411490.ANACAC_00770	NA	NA
UHGV-0187888_11	Pfam	PF20378	NA	DUF6673
UHGV-0187888_11	Structural annotation	PF20378	NA	NA
UHGV-0187888_12	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0187888_12	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0187888_12	UniRef90	UniRef90_A0A374AE92	BIG2 domain-containing protein	NA
UHGV-0187888_12	eggNOG-mapper	411490.ANACAC_00771	domain, Protein	NA
UHGV-0187888_12	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0187888_12	COG	COG5492	NA	NA
UHGV-0187888_12	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-0187888_13	PHROG	phrog_3099	NA	unknown function
UHGV-0187888_13	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0187888_13	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0187888_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0187888_14	PHROG	phrog_3266	tail completion	connector
UHGV-0187888_14	UniRef90	UniRef90_A0A415G5E6	Chloramphenicol resistance protein	NA
UHGV-0187888_14	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0187888_14	Structural annotation	PF12691	NA	NA
UHGV-0187888_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187888_15	UniRef90	UniRef90_A0A415UCL3	Capsid protein	NA
UHGV-0187888_15	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0187888_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0187888_15	Structural annotation	PF11114	NA	NA
UHGV-0187888_16	PHROG	phrog_3366	NA	unknown function
UHGV-0187888_16	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0187888_16	Pfam	PF20536	NA	DUF6751
UHGV-0187888_16	Structural annotation	PF20536	NA	NA
UHGV-0187888_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187888_17	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0187888_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187888_18	UniRef90	UniRef90_A0A374AE57	Phage major capsid protein	NA
UHGV-0187888_18	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0187888_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187888_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187888_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187888_18	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187888_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187888_19	UniRef90	UniRef90_UPI00033ED4BB	phage scaffolding protein	NA
UHGV-0187888_19	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0187888_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187888_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0187888_20	KOfam	K07584	NA	NA
UHGV-0187888_20	PHROG	phrog_4478	peptidase	other
UHGV-0187888_20	UniRef90	UniRef90_UPI001CD78D82	ribosomal-processing cysteine protease Prp	NA
UHGV-0187888_20	eggNOG-mapper	525309.HMPREF0494_1858	Cysteine protease Prp	NA
UHGV-0187888_20	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0187888_20	COG	COG2868	NA	NA
UHGV-0187888_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187888_22	UniRef90	UniRef90_UPI001CD3268D	phage minor capsid protein	NA
UHGV-0187888_22	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0187888_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187888_22	COG	COG2369	NA	NA
UHGV-0187888_22	Structural annotation	PF06152	NA	NA
UHGV-0187888_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187888_23	UniRef90	UniRef90_A0A374AE34	Phage portal protein	NA
UHGV-0187888_23	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0187888_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187888_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187888_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187888_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0187888_24	UniRef90	UniRef90_A0A374AGB7	PBSX family phage terminase large subunit	NA
UHGV-0187888_24	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0187888_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187888_24	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187888_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0187888_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0187888_25	UniRef90	UniRef90_UPI001CD60BBE	terminase small subunit	NA
UHGV-0187888_25	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0187888_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0187888_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0187888_25	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA