UHGV-0187909

Genome information

Genome length 31,933 bps

CDS count 49

Completeness 87.44% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187909
vOTU ID	vOTU-029731
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593596
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.74
Jumbo phage	No

Genome content
Genome length	31,933 bps
GC content	54.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.68%
Average CDS length	600.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187909_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0187909_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0187909_1	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0187909_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0187909_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0187909_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187909_2	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0187909_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0187909_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187909_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187909_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187909_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0187909_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187909_3	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0187909_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0187909_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187909_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0187909_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187909_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0187909_4	KOfam	K06904	NA	NA
UHGV-0187909_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0187909_4	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0187909_4	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0187909_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0187909_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0187909_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0187909_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0187909_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187909_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187909_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0187909_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187909_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0187909_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187909_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187909_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187909_6	PHROG	phrog_2550	NA	unknown function
UHGV-0187909_6	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0187909_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0187909_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0187909_7	PHROG	phrog_19734	NA	unknown function
UHGV-0187909_7	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0187909_7	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0187909_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187909_8	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0187909_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187909_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0187909_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0187909_9	Structural annotation	TIGR01725	NA	NA
UHGV-0187909_10	PHROG	phrog_88	major tail protein	tail
UHGV-0187909_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0187909_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0187909_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0187909_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0187909_13	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0187909_13	UniRef90	UniRef90_A0A7X6UMX1	Phage tail protein (Fragment)	NA
UHGV-0187909_13	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0187909_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0187909_13	Structural annotation	PF20155	NA	NA
UHGV-0187909_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0187909_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0187909_14	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0187909_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0187909_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0187909_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0187909_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0187909_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0187909_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0187909_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0187909_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0187909_15	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0187909_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0187909_15	COG	COG4926	Phage-related protein	NA
UHGV-0187909_15	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0187909_16	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0187909_16	PHROG	phrog_819	tail protein	tail
UHGV-0187909_16	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0187909_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0187909_16	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0187909_20	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0187909_20	Structural annotation	PF12988	NA	NA
UHGV-0187909_21	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0187909_21	PHROG	phrog_329	minor tail protein	tail
UHGV-0187909_21	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0187909_21	eggNOG-mapper	1089546.AQUI01000002_gene3251	NlpC/P60 family	NA
UHGV-0187909_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0187909_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0187909_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0187909_21	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0187909_22	PHROG	phrog_199	holin	lysis
UHGV-0187909_22	UniRef90	UniRef90_A0A316PI30	Holin	NA
UHGV-0187909_22	eggNOG-mapper	1216932.CM240_0689	toxin secretion phage lysis holin	NA
UHGV-0187909_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0187909_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0187909_22	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0187909_22	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0187909_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187909_25	Structural annotation	PF21291, TIGR02607, COG3093	NA	NA
UHGV-0187909_27	UniRef90	UniRef90_A0A415ZLW7	DNA-binding response regulator	NA
UHGV-0187909_27	eggNOG-mapper	689781.AUJX01000009_gene401	NA	NA
UHGV-0187909_27	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0187909_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0187909_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0187909_28	UniRef90	UniRef90_A0A352UMB6	Recombinase family protein	NA
UHGV-0187909_28	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0187909_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0187909_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0187909_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0187909_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0187909_28	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0187909_29	UniRef90	UniRef90_A0A542YGG9	TM2 domain-containing protein	NA
UHGV-0187909_29	eggNOG-mapper	1280682.AUKA01000008_gene3204	Sh3 type 3 domain protein	NA
UHGV-0187909_29	COG	COG3103	NA	NA
UHGV-0187909_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187909_30	UniRef90	UniRef90_A0A2X2WL53	XRE family transcriptional regulator	NA
UHGV-0187909_30	eggNOG-mapper	742740.HMPREF9474_01673	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187909_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187909_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187909_31	UniRef90	UniRef90_A8U888	Transcriptional regulator, Cro/CI family protein	NA
UHGV-0187909_31	eggNOG-mapper	226185.EF_2040	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0187909_31	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0187909_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187909_31	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0187909_33	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0187909_33	Pfam	PF19789	NA	DUF6273
UHGV-0187909_33	Structural annotation	PF19789	NA	NA
UHGV-0187909_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0187909_34	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187909_34	UniRef90	UniRef90_UPI00082FB90B	HNH endonuclease	NA
UHGV-0187909_34	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0187909_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0187909_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0187909_37	PHROG	phrog_24368	NA	unknown function
UHGV-0187909_38	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187909_38	UniRef90	UniRef90_UPI00112CDEA2	conserved phage C-terminal domain-containing protein	NA
UHGV-0187909_38	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0187909_38	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0187909_38	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0187909_38	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0187909_38	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-0187909_39	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0187909_39	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-0187909_39	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0187909_39	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0187909_39	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0187909_39	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0187909_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187909_41	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0187909_41	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0187909_42	PHROG	phrog_21498	NA	unknown function
UHGV-0187909_42	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0187909_42	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0187909_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187909_42	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0187909_43	PHROG	phrog_824	NA	unknown function
UHGV-0187909_43	UniRef90	UniRef90_UPI001B37B675	VRR-NUC domain-containing protein	NA
UHGV-0187909_43	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0187909_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0187909_45	PHROG	phrog_22543	NA	unknown function
UHGV-0187909_47	Pfam	PF20037	NA	DUF6440
UHGV-0187909_47	Structural annotation	PF20037	NA	NA
UHGV-0187909_48	Pfam	PF07374	NA	DUF1492