UHGV-0187967

Genome information

Genome length 33,939 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187967
vOTU ID	vOTU-000906
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595105
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.77
Jumbo phage	No

Genome content
Genome length	33,939 bps
GC content	53.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.78%
Average CDS length	576.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187967_1	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0187967_1	PHROG	phrog_4646	transposase	integration and excision
UHGV-0187967_1	UniRef90	UniRef90_A0A1Q6JJ51	IS30 family transposase	NA
UHGV-0187967_1	eggNOG-mapper	411483.FAEPRAA2165_01933	PFAM Integrase catalytic region	NA
UHGV-0187967_1	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0187967_1	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0187967_1	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0187967_1	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0187967_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0187967_4	UniRef90	UniRef90_UPI0009EB5089	helix-turn-helix domain-containing protein	NA
UHGV-0187967_4	eggNOG-mapper	397288.C806_01239	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0187967_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187967_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0187967_4	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0187967_5	PHROG	phrog_443	holin	lysis
UHGV-0187967_5	UniRef90	UniRef90_UPI001C3BFF52	Holin	NA
UHGV-0187967_5	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0187967_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0187967_5	Structural annotation	PF16945	NA	NA
UHGV-0187967_6	PHROG	phrog_4105	NA	unknown function
UHGV-0187967_6	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0187967_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0187967_7	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0187967_7	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0187967_7	eggNOG-mapper	1120746.CCNL01000017_gene3150	Peptidase family M23	NA
UHGV-0187967_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0187967_7	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0187967_7	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0187967_9	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0187967_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0187967_9	UniRef90	UniRef90_A0A174XM65	Retron-type reverse transcriptase	NA
UHGV-0187967_9	eggNOG-mapper	397290.C810_00436	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0187967_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0187967_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0187967_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0187967_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0187967_10	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0187967_10	UniRef90	UniRef90_A0A4Q5C4R2	Diversity-generating retroelement protein Avd	NA
UHGV-0187967_10	eggNOG-mapper	411902.CLOBOL_03865	23S rRNA-intervening sequence protein	NA
UHGV-0187967_10	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0187967_10	NCBIFam	NF033474.1	diversity-generating retroelement protein Avd	NA
UHGV-0187967_10	Structural annotation	PF05635, NF033474	NA	NA
UHGV-0187967_11	PHROG	phrog_11262	tail protein	tail
UHGV-0187967_11	UniRef90	UniRef90_A0A174VYJ7	Serine/threonine-protein kinase pkn1	NA
UHGV-0187967_11	eggNOG-mapper	411902.CLOBOL_03866	Sulfatase-modifying factor enzyme 1	NA
UHGV-0187967_11	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0187967_11	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-0187967_12	eggNOG-mapper	411468.CLOSCI_00536	NA	NA
UHGV-0187967_12	Structural annotation	PF13753, NF009633	NA	NA
UHGV-0187967_13	PHROG	phrog_1220	head protein	head and packaging
UHGV-0187967_13	UniRef90	UniRef90_UPI00178079AB	structural protein	NA
UHGV-0187967_13	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0187967_13	Structural annotation	PF20747	NA	NA
UHGV-0187967_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0187967_14	UniRef90	UniRef90_UPI00195822CE	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0187967_14	eggNOG-mapper	1120746.CCNL01000017_gene2788	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0187967_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0187967_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0187967_15	PHROG	phrog_36410	NA	unknown function
UHGV-0187967_15	UniRef90	UniRef90_UPI001956B909	phage tail family protein	NA
UHGV-0187967_15	eggNOG-mapper	1120746.CCNL01000017_gene2787	NA	NA
UHGV-0187967_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0187967_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0187967_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0187967_16	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0187967_16	UniRef90	UniRef90_A0A1Q6JJ53	Phage tail tape measure protein	NA
UHGV-0187967_16	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0187967_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0187967_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0187967_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0187967_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0187967_17	PHROG	phrog_3033	NA	unknown function
UHGV-0187967_17	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0187967_17	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0187967_18	PHROG	phrog_709	NA	unknown function
UHGV-0187967_18	eggNOG-mapper	1111121.HMPREF1247_1238	NA	NA
UHGV-0187967_18	Structural annotation	PF11836	NA	NA
UHGV-0187967_19	PHROG	phrog_88	major tail protein	tail
UHGV-0187967_19	UniRef90	UniRef90_A0A1W6WCR7	Phage tail protein	NA
UHGV-0187967_19	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-0187967_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0187967_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0187967_20	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0187967_20	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0187967_20	Structural annotation	PF20765	NA	NA
UHGV-0187967_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0187967_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0187967_21	UniRef90	UniRef90_A0A1Q6T9C8	Exonuclease domain-containing protein	NA
UHGV-0187967_21	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0187967_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0187967_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0187967_21	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0187967_21	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0187967_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187967_22	UniRef90	UniRef90_UPI000F5C5DF4	HK97 gp10 family phage protein	NA
UHGV-0187967_22	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0187967_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0187967_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0187967_23	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0187967_23	UniRef90	UniRef90_A0A7M2A7Q8	Phage head closure protein	NA
UHGV-0187967_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0187967_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0187967_24	PHROG	phrog_5223	neck protein	connector
UHGV-0187967_24	UniRef90	UniRef90_D9SQ12	Putative phage protein	NA
UHGV-0187967_24	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0187967_24	Structural annotation	TIGR01560	NA	NA
UHGV-0187967_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0187967_25	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0187967_25	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0187967_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0187967_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0187967_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0187967_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0187967_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0187967_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0187967_26	UniRef90	UniRef90_UPI00085C9406	Clp protease ClpP	NA
UHGV-0187967_26	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-0187967_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0187967_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0187967_26	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0187967_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0187967_27	UniRef90	UniRef90_UPI00085C10F1	phage portal protein	NA
UHGV-0187967_27	eggNOG-mapper	931626.Awo_c35110	Phage portal protein	NA
UHGV-0187967_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0187967_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0187967_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0187967_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0187967_28	UniRef90	UniRef90_A0A1M4ZG50	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187967_28	eggNOG-mapper	1211814.CAPG01000074_gene3457	Terminase	NA
UHGV-0187967_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0187967_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0187967_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0187967_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0187967_29	PHROG	phrog_1066	NA	unknown function
UHGV-0187967_29	eggNOG-mapper	1229783.C273_11286	NA	NA
UHGV-0187967_29	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0187967_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187967_30	UniRef90	UniRef90_UPI0018971728	HNH endonuclease	NA
UHGV-0187967_30	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-0187967_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187967_32	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0187967_32	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0187967_32	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0187967_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0187967_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0187967_32	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0187967_33	PHROG	phrog_874	NA	unknown function
UHGV-0187967_33	UniRef90	UniRef90_UPI000CDA362A	ASCH domain-containing protein	NA
UHGV-0187967_33	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0187967_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0187967_35	PHROG	phrog_625	NA	unknown function
UHGV-0187967_35	UniRef90	UniRef90_A0A6L5YHS1	ASCH domain-containing protein	NA
UHGV-0187967_35	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0187967_35	Pfam	PF04266	ASCH domain	ASCH
UHGV-0187967_35	Structural annotation	PF12961, NF003443, COG2947	NA	NA
UHGV-0187967_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0187967_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0187967_36	UniRef90	UniRef90_UPI0012DEC6BA	DNA cytosine methyltransferase	NA
UHGV-0187967_36	eggNOG-mapper	755731.Clo1100_3595	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0187967_36	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0187967_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0187967_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0187967_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187967_36	Structural annotation	PF00145, MF_01012, TIGR00675, COG0270	NA	NA
UHGV-0187967_37	PHROG	phrog_7711	NA	unknown function
UHGV-0187967_37	eggNOG-mapper	886882.PPSC2_p0287	NA	NA
UHGV-0187967_41	eggNOG-mapper	1235798.C817_04576	NA	NA
UHGV-0187967_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0187967_42	PHROG	phrog_27290	NA	unknown function
UHGV-0187967_42	UniRef90	UniRef90_A0A0K9MH89	ParB domain-containing protein	NA
UHGV-0187967_42	eggNOG-mapper	411463.EUBVEN_00458	NA	NA
UHGV-0187967_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187967_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187967_42	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0187967_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0187967_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0187967_47	UniRef90	UniRef90_A0A413FZG0	ParA family protein	NA
UHGV-0187967_47	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0187967_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-0187967_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0187967_47	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0187967_49	PHROG	phrog_824	NA	unknown function
UHGV-0187967_49	UniRef90	UniRef90_A0A1Q6L1S1	VRR-NUC domain-containing protein	NA
UHGV-0187967_49	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0187967_49	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0187967_49	Structural annotation	PF08774	NA	NA
UHGV-0187967_50	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0187967_50	UniRef90	UniRef90_UPI0018A105EA	NA	NA
UHGV-0187967_50	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0187967_50	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0187967_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0187967_50	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0187967_52	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0187967_52	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0187967_52	UniRef90	UniRef90_A0A0E2E9E3	Methyltransferase	NA
UHGV-0187967_52	eggNOG-mapper	1378168.N510_02840	DNA methylase	NA
UHGV-0187967_52	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0187967_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0187967_52	COG	COG0863	DNA modification methylase	NA
UHGV-0187967_53	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0187967_53	COG	COG0863	DNA modification methylase	NA
UHGV-0187967_55	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0187967_55	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187967_55	UniRef90	UniRef90_A0A1Q6SYF5	HTH_38 domain-containing protein	NA
UHGV-0187967_55	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-0187967_55	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0187967_55	Structural annotation	PF04218	NA	NA