UHGV-0187968

Genome information

Genome length 34,067 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187968
vOTU ID	vOTU-003776
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595104
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.86
Jumbo phage	No

Genome content
Genome length	34,067 bps
GC content	43.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.88%
Average CDS length	593.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187968_1	PHROG	phrog_27197	NA	unknown function
UHGV-0187968_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0187968_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0187968_3	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0187968_3	UniRef90	UniRef90_UPI001CC4710F	siphovirus Gp157 family protein	NA
UHGV-0187968_3	eggNOG-mapper	1145276.T479_16375	Siphovirus Gp157	NA
UHGV-0187968_3	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0187968_3	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0187968_4	PHROG	phrog_11717	NA	unknown function
UHGV-0187968_4	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0187968_4	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0187968_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0187968_5	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0187968_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0187968_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0187968_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0187968_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0187968_6	UniRef90	UniRef90_R6RG83	Single-stranded DNA-binding protein	NA
UHGV-0187968_6	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0187968_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0187968_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0187968_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0187968_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0187968_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0187968_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0187968_7	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0187968_7	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0187968_7	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0187968_8	Pfam	PF08279	HTH domain	HTH_11
UHGV-0187968_9	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0187968_9	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0187968_9	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0187968_10	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0187968_10	UniRef90	UniRef90_A0A6I2QY26	DNA cytosine methyltransferase	NA
UHGV-0187968_10	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0187968_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187968_10	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0187968_13	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0187968_13	PHROG	phrog_8684	NA	unknown function
UHGV-0187968_13	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0187968_13	eggNOG-mapper	55529.EKX31848	dUTP metabolic process	NA
UHGV-0187968_13	Pfam	PF00692	dUTPase	dUTPase
UHGV-0187968_13	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0187968_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0187968_14	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0187968_14	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0187968_14	Structural annotation	PF07374, TIGR02984	NA	NA
UHGV-0187968_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0187968_15	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0187968_15	UniRef90	UniRef90_A0A4R3TFN4	ParB-like nuclease family protein	NA
UHGV-0187968_15	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0187968_15	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0187968_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0187968_15	Pfam	PF14386	NA	DUF4417
UHGV-0187968_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0187968_15	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0187968_18	PHROG	phrog_2412	NA	unknown function
UHGV-0187968_18	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0187968_18	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0187968_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187968_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0187968_19	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0187968_19	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0187968_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0187968_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187968_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187968_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187968_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0187968_20	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-0187968_20	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0187968_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187968_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0187968_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0187968_21	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0187968_21	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0187968_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0187968_21	COG	COG2369	NA	NA
UHGV-0187968_21	Structural annotation	PF06152	NA	NA
UHGV-0187968_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187968_22	UniRef90	UniRef90_R6DN20	Phage minor structural protein GP20	NA
UHGV-0187968_22	eggNOG-mapper	748727.CLJU_c31330	Phage minor structural protein GP20	NA
UHGV-0187968_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187968_22	Structural annotation	PF06810	NA	NA
UHGV-0187968_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0187968_23	UniRef90	UniRef90_UPI00148C9F04	N4-gp56 family major capsid protein	NA
UHGV-0187968_23	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0187968_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0187968_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0187968_24	UniRef90	UniRef90_R6DKE0	Putative gp8	NA
UHGV-0187968_24	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0187968_25	PHROG	phrog_3366	NA	unknown function
UHGV-0187968_25	Pfam	PF20536	NA	DUF6751
UHGV-0187968_25	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0187968_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0187968_26	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0187968_26	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0187968_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0187968_26	Structural annotation	PF11114	NA	NA
UHGV-0187968_27	PHROG	phrog_3266	tail completion	connector
UHGV-0187968_27	UniRef90	UniRef90_A0A2N2DPR7	Chloramphenicol resistance protein	NA
UHGV-0187968_27	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0187968_27	Structural annotation	PF12691	NA	NA
UHGV-0187968_28	PHROG	phrog_3099	NA	unknown function
UHGV-0187968_28	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0187968_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0187968_29	Structural annotation	PF10666	NA	NA
UHGV-0187968_30	PHROG	phrog_706	NA	unknown function
UHGV-0187968_30	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0187968_30	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0187968_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0187968_30	Structural annotation	PF06854	NA	NA
UHGV-0187968_31	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0187968_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0187968_31	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0187968_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0187968_32	PHROG	phrog_1194	NA	unknown function
UHGV-0187968_33	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0187968_33	eggNOG-mapper	1235793.C809_04661	NA	NA
UHGV-0187968_33	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0187968_33	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0187968_34	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0187968_34	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0187968_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0187968_36	PHROG	phrog_1863	NA	unknown function
UHGV-0187968_36	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0187968_37	PHROG	phrog_962	holin	lysis
UHGV-0187968_37	UniRef90	UniRef90_UPI001655FC48	phage holin	NA
UHGV-0187968_37	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0187968_37	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0187968_37	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0187968_37	COG	COG5546	NA	NA
UHGV-0187968_37	Structural annotation	COG5546	NA	NA
UHGV-0187968_38	PHROG	phrog_8781	endolysin	lysis
UHGV-0187968_38	UniRef90	UniRef90_A0A3D2TQQ9	Peptidase C51 domain-containing protein	NA
UHGV-0187968_38	eggNOG-mapper	904314.SEVCU012_1218	CHAP domain	NA
UHGV-0187968_38	Pfam	PF05257	CHAP domain	CHAP
UHGV-0187968_38	COG	COG1388	LysM repeat	NA
UHGV-0187968_38	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0187968_41	PHROG	phrog_21718	NA	unknown function
UHGV-0187968_42	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0187968_43	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187968_45	KOfam	K14059	int; integrase	NA
UHGV-0187968_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0187968_45	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0187968_45	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0187968_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0187968_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187968_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187968_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0187968_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0187968_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187968_46	UniRef90	UniRef90_UPI00067DD2DE	helix-turn-helix domain-containing protein	NA
UHGV-0187968_46	eggNOG-mapper	1125712.HMPREF1316_0480	sequence-specific DNA binding	NA
UHGV-0187968_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0187968_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0187968_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187968_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187968_49	UniRef90	UniRef90_A0A416JYN0	XRE family transcriptional regulator	NA
UHGV-0187968_49	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0187968_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187968_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187968_49	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0187968_50	UniRef90	UniRef90_A0A3B9SF96	HTH cro/C1-type domain-containing protein	NA
UHGV-0187968_50	Pfam	PF05339	NA	DUF739
UHGV-0187968_50	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0187968_50	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0187968_53	PHROG	phrog_4433	NA	unknown function
UHGV-0187968_53	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0187968_53	COG	COG5164	Transcription elongation factor SPT5	NA