UHGV-0188001

Genome information

Genome length 20,889 bps

CDS count 29

Completeness 52.63% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188001
vOTU ID	vOTU-029736
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598105
BioSample	SAMN10407349
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.59
Jumbo phage	No

Genome content
Genome length	20,889 bps
GC content	41.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.46%
Average CDS length	696.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188001_1	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188001_1	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0188001_1	eggNOG-mapper	469616.FMAG_01960	NA	NA
UHGV-0188001_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0188001_1	COG	COG5484	NA	NA
UHGV-0188001_1	Structural annotation	PF06056, NF040601	NA	NA
UHGV-0188001_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188001_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0188001_2	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0188001_2	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0188001_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0188001_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188001_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188001_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0188001_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188001_3	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0188001_3	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0188001_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188001_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188001_5	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0188001_5	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0188001_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188001_5	COG	COG2369	NA	NA
UHGV-0188001_5	Structural annotation	PF06152	NA	NA
UHGV-0188001_6	PHROG	phrog_15041	NA	unknown function
UHGV-0188001_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0188001_7	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0188001_7	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0188001_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0188001_7	Structural annotation	PF06810	NA	NA
UHGV-0188001_8	PHROG	phrog_212	major head protein	head and packaging
UHGV-0188001_8	UniRef90	UniRef90_A0A416HMC2	Phage capsid protein	NA
UHGV-0188001_8	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0188001_8	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0188001_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188001_10	PHROG	phrog_28328	NA	unknown function
UHGV-0188001_10	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0188001_11	PHROG	phrog_3366	NA	unknown function
UHGV-0188001_11	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0188001_11	Pfam	PF20536	NA	DUF6751
UHGV-0188001_11	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0188001_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188001_12	UniRef90	UniRef90_A0A2X0Z788	1-phosphatidylinositol phosphodiesterase	NA
UHGV-0188001_12	eggNOG-mapper	679192.HMPREF9013_1298	NA	NA
UHGV-0188001_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188001_12	Structural annotation	PF11114	NA	NA
UHGV-0188001_13	PHROG	phrog_3266	tail completion	connector
UHGV-0188001_13	eggNOG-mapper	999411.HMPREF1092_03317	NA	NA
UHGV-0188001_13	Structural annotation	PF12691	NA	NA
UHGV-0188001_14	PHROG	phrog_3099	NA	unknown function
UHGV-0188001_14	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0188001_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0188001_15	UniRef90	UniRef90_A0A6L5YI08	RNA polymerase subunit sigma	NA
UHGV-0188001_15	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0188001_15	Structural annotation	PF10666	NA	NA
UHGV-0188001_16	PHROG	phrog_706	NA	unknown function
UHGV-0188001_16	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-0188001_16	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0188001_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188001_16	Structural annotation	PF06854	NA	NA
UHGV-0188001_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0188001_17	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0188001_17	COG	COG5412	Phage-related protein	NA
UHGV-0188001_19	PHROG	phrog_1194	NA	unknown function
UHGV-0188001_19	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0188001_19	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0188001_20	PHROG	phrog_13879	NA	unknown function
UHGV-0188001_20	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0188001_20	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0188001_21	PHROG	phrog_18725	NA	unknown function
UHGV-0188001_21	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0188001_22	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0188001_24	PHROG	phrog_134	NA	unknown function
UHGV-0188001_24	UniRef90	UniRef90_A0A4R1QUT2	XkdX-like protein	NA
UHGV-0188001_24	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0188001_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0188001_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0188001_25	PHROG	phrog_1863	NA	unknown function
UHGV-0188001_25	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0188001_25	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0188001_27	PHROG	phrog_6918	holin	lysis
UHGV-0188001_27	UniRef90	UniRef90_R7N8N9	Phage holin LL-H family	NA
UHGV-0188001_27	eggNOG-mapper	1235792.C808_00574	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0188001_27	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0188001_27	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0188001_27	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0188001_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0188001_29	PHROG	phrog_291	endolysin	lysis
UHGV-0188001_29	UniRef90	UniRef90_UPI00082B86B1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0188001_29	eggNOG-mapper	1127131.WEISSC39_10855	hydrolase, family 25	NA
UHGV-0188001_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0188001_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0188001_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0188001_29	Structural annotation	PF01183, COG3757	NA	NA