UHGV-0188056

Genome information

vOTU vOTU-071948

Genome length 31,521 bps

CDS count 50

Completeness 92.29% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188056
vOTU ID	vOTU-071948
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598236
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.77
Jumbo phage	No

Genome content
Genome length	31,521 bps
GC content	48.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	84.52%
Average CDS length	534.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188056_4	PHROG	phrog_31911	NA	unknown function
UHGV-0188056_4	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-0188056_4	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-0188056_5	Structural annotation	PF17600	NA	NA
UHGV-0188056_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188056_12	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0188056_12	Structural annotation	PF11726	NA	NA
UHGV-0188056_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188056_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188056_13	UniRef90	UniRef90_R6AK08	Single-stranded DNA-binding protein	NA
UHGV-0188056_13	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0188056_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188056_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188056_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188056_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188056_13	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0188056_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0188056_16	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0188056_16	Structural annotation	PF07374, TIGR02984, COG2739	NA	NA
UHGV-0188056_18	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-0188056_18	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0188056_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188056_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188056_19	PHROG	phrog_1066	NA	unknown function
UHGV-0188056_19	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0188056_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0188056_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0188056_20	UniRef90	UniRef90_A0A8D4UU77	Terminase	NA
UHGV-0188056_20	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0188056_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0188056_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0188056_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0188056_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0188056_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0188056_21	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-0188056_21	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0188056_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0188056_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0188056_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0188056_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0188056_22	KOfam	K06904	NA	NA
UHGV-0188056_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0188056_22	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-0188056_22	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0188056_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0188056_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0188056_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0188056_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0188056_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188056_23	UniRef90	UniRef90_UPI001648ED55	phage major capsid protein	NA
UHGV-0188056_23	eggNOG-mapper	1232428.CAVO010000003_gene1009	phage major capsid protein, HK97 family	NA
UHGV-0188056_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188056_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188056_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188056_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188056_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0188056_24	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-0188056_24	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-0188056_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0188056_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0188056_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0188056_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0188056_25	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-0188056_25	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0188056_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0188056_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0188056_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0188056_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0188056_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0188056_26	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-0188056_26	eggNOG-mapper	568816.Acin_1971	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0188056_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0188056_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0188056_27	PHROG	phrog_525	NA	unknown function
UHGV-0188056_27	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0188056_27	Pfam	PF20765	NA	DUF6838
UHGV-0188056_27	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0188056_28	PHROG	phrog_1480	tail sheath	tail
UHGV-0188056_28	UniRef90	UniRef90_A0A8D5A277	Phage portal protein	NA
UHGV-0188056_28	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0188056_28	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0188056_28	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0188056_28	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0188056_29	PHROG	phrog_365	tail protein	tail
UHGV-0188056_29	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-0188056_29	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0188056_29	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0188056_29	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0188056_30	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0188056_30	UniRef90	UniRef90_UPI000575014D	XkdN-like protein	NA
UHGV-0188056_30	eggNOG-mapper	1211817.CCAT010000008_gene949	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0188056_30	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0188056_30	Structural annotation	PF08890	NA	NA
UHGV-0188056_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0188056_31	UniRef90	UniRef90_A0A8D4UU63	PhageMin_Tail domain-containing protein	NA
UHGV-0188056_31	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0188056_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0188056_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0188056_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0188056_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0188056_32	PHROG	phrog_5184	NA	unknown function
UHGV-0188056_32	UniRef90	UniRef90_I0GWS0	Phage related protein	NA
UHGV-0188056_32	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0188056_32	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0188056_32	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0188056_32	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0188056_33	PHROG	phrog_400	tail protein	tail
UHGV-0188056_33	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0188056_33	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0188056_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0188056_33	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0188056_34	PHROG	phrog_579	NA	unknown function
UHGV-0188056_34	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0188056_34	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0188056_34	Pfam	PF10844	NA	DUF2577
UHGV-0188056_34	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0188056_35	PHROG	phrog_120	baseplate protein	tail
UHGV-0188056_35	UniRef90	UniRef90_A0A2S0M4I9	NA	NA
UHGV-0188056_35	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0188056_35	Pfam	PF10934	NA	DUF2634
UHGV-0188056_35	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0188056_35	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0188056_36	PHROG	phrog_6	baseplate protein	tail
UHGV-0188056_36	UniRef90	UniRef90_A0A8E4BRX6	Phage-like element PBSX protein XkdT	NA
UHGV-0188056_36	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0188056_36	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0188056_36	COG	COG3299	NA	NA
UHGV-0188056_36	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0188056_37	PHROG	phrog_521	tail protein	tail
UHGV-0188056_37	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-0188056_37	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0188056_37	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0188056_37	COG	COG3778	NA	NA
UHGV-0188056_37	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0188056_38	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0188056_38	UniRef90	UniRef90_UPI0011DDC8BE	phage tail protein	NA
UHGV-0188056_38	eggNOG-mapper	690850.Desaf_3543	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0188056_38	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0188056_38	Structural annotation	PF12571	NA	NA
UHGV-0188056_39	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0188056_39	Structural annotation	NF012201	NA	NA
UHGV-0188056_41	KOfam	K14059	int; integrase	NA
UHGV-0188056_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0188056_41	UniRef90	UniRef90_A0A1G5VJA4	Site-specific recombinase XerD	NA
UHGV-0188056_41	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0188056_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0188056_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0188056_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0188056_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0188056_46	PHROG	phrog_291	endolysin	lysis
UHGV-0188056_46	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0188056_46	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0188056_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0188056_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0188056_46	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0188056_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0188056_48	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0188056_48	UniRef90	UniRef90_D4LI84	Methyltransferase	NA
UHGV-0188056_48	eggNOG-mapper	1423758.BN55_09485	DNA methylase	NA
UHGV-0188056_48	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0188056_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0188056_48	COG	COG0863	DNA modification methylase	NA
UHGV-0188056_48	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0188056_50	eggNOG-mapper	699218.HMPREF0889_1153	NA	NA