UHGV-0188073

Genome information

Genome length 26,570 bps

CDS count 43

Completeness 91.37% (high-quality)

geNomad score 0.9537

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188073
vOTU ID	vOTU-063894
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2579988_a1_ct24886_vs1@Siphoviridae__sp._ct2UC1
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9537
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.62
Jumbo phage	No

Genome content
Genome length	26,570 bps
GC content	28.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	89.94%
Average CDS length	560.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188073_1	PHROG	phrog_6600	NA	unknown function
UHGV-0188073_1	UniRef90	UniRef90_A0A0H3JSK9	HIRAN domain-containing protein	NA
UHGV-0188073_1	eggNOG-mapper	1280.SAXN108_0311	HIRAN domain	NA
UHGV-0188073_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188073_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188073_2	UniRef90	UniRef90_A0A4U7J886	Helix-turn-helix transcriptional regulator	NA
UHGV-0188073_2	eggNOG-mapper	1235792.C808_02455	Peptidase S24-like	NA
UHGV-0188073_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188073_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0188073_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0188073_3	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0188073_3	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188073_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0188073_3	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0188073_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0188073_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0188073_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0188073_8	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0188073_8	eggNOG-mapper	1168289.AJKI01000067_gene1520	NA	NA
UHGV-0188073_8	Pfam	PF19808	NA	DUF6291
UHGV-0188073_8	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0188073_8	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0188073_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0188073_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0188073_9	UniRef90	UniRef90_A0A7K3Z8Y2	AAA family ATPase	NA
UHGV-0188073_9	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-0188073_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0188073_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0188073_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0188073_19	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0188073_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0188073_19	UniRef90	UniRef90_UPI000E3F9CA4	tyrosine-type recombinase/integrase	NA
UHGV-0188073_19	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0188073_19	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0188073_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0188073_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0188073_19	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0188073_20	Structural annotation	PF15456	NA	NA
UHGV-0188073_21	PHROG	phrog_709	NA	unknown function
UHGV-0188073_21	Structural annotation	PF11836	NA	NA
UHGV-0188073_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188073_23	UniRef90	UniRef90_A0A2J6NIF5	HNH endonuclease	NA
UHGV-0188073_23	eggNOG-mapper	1536774.H70357_10600	HNH nucleases	NA
UHGV-0188073_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188073_24	PHROG	phrog_1066	NA	unknown function
UHGV-0188073_24	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0188073_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0188073_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0188073_25	UniRef90	UniRef90_UPI001CFF08E1	terminase large subunit	NA
UHGV-0188073_25	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0188073_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0188073_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0188073_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0188073_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0188073_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0188073_26	UniRef90	UniRef90_UPI001CFCE6F1	phage portal protein	NA
UHGV-0188073_26	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0188073_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0188073_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0188073_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0188073_27	KOfam	K06904	NA	NA
UHGV-0188073_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0188073_27	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0188073_27	eggNOG-mapper	642492.Clole_1857	Phage prohead protease, HK97 family	NA
UHGV-0188073_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0188073_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0188073_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0188073_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0188073_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188073_28	UniRef90	UniRef90_A0A356CXS9	Phage major capsid protein	NA
UHGV-0188073_28	eggNOG-mapper	1160721.RBI_I01582	Phage capsid family	NA
UHGV-0188073_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188073_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188073_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188073_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188073_29	PHROG	phrog_5223	neck protein	connector
UHGV-0188073_29	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-0188073_29	Structural annotation	TIGR01560	NA	NA
UHGV-0188073_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0188073_30	UniRef90	UniRef90_E0E204	Putative phage head-tail adaptor	NA
UHGV-0188073_30	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0188073_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0188073_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0188073_31	UniRef90	UniRef90_A0A843HQ28	HK97 gp10 family phage protein	NA
UHGV-0188073_31	eggNOG-mapper	1341151.ASZU01000004_gene257	NA	NA
UHGV-0188073_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0188073_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0188073_32	PHROG	phrog_78	tail terminator	connector
UHGV-0188073_32	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-0188073_32	eggNOG-mapper	397288.C806_00766	NA	NA
UHGV-0188073_32	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0188073_33	PHROG	phrog_88	major tail protein	tail
UHGV-0188073_33	UniRef90	UniRef90_A0A285G757	Phage major tail protein, phi13 family	NA
UHGV-0188073_33	eggNOG-mapper	411490.ANACAC_00732	phage major tail protein, phi13 family	NA
UHGV-0188073_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0188073_33	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0188073_34	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0188073_34	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0188073_34	COG	COG1511	NA	NA
UHGV-0188073_34	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0188073_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0188073_35	UniRef90	UniRef90_A0A120MKD9	Phage tail protein	NA
UHGV-0188073_35	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0188073_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0188073_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0188073_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0188073_36	UniRef90	UniRef90_UPI001C1127BE	phage tail protein	NA
UHGV-0188073_36	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0188073_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0188073_36	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0188073_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0188073_36	COG	COG4926	Phage-related protein	NA
UHGV-0188073_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0188073_38	PHROG	phrog_24267	NA	unknown function
UHGV-0188073_38	UniRef90	UniRef90_A0A0F7L5Y2	Phage capsid protein	NA
UHGV-0188073_38	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0188073_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0188073_38	Structural annotation	COG4675	NA	NA
UHGV-0188073_39	PHROG	phrog_13632	NA	unknown function
UHGV-0188073_42	UniRef90	UniRef90_A0A3B9T5N2	Peptidase C51 domain-containing protein	NA
UHGV-0188073_42	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-0188073_42	Pfam	PF05257	CHAP domain	CHAP
UHGV-0188073_42	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0188073_42	Structural annotation	PF02427, COG3942, COG2139	NA	NA
UHGV-0188073_43	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1