UHGV-0188119

Genome information

vOTU vOTU-019944

Genome length 28,116 bps

CDS count 59

Completeness 64.52% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188119
vOTU ID	vOTU-019944
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2579917_a1_ct34778_vs1@Siphoviridae__sp._ctrzL1
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.26
Jumbo phage	No

Genome content
Genome length	28,116 bps
GC content	42.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.91%
Average CDS length	432.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188119_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0188119_1	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-0188119_1	UniRef90	UniRef90_UPI001BBFD8A7	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0188119_1	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0188119_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0188119_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0188119_1	Structural annotation	PF03374, COG3645, COG3561	NA	NA
UHGV-0188119_5	PHROG	phrog_4433	NA	unknown function
UHGV-0188119_5	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0188119_5	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0188119_6	UniRef90	UniRef90_A0A2Z4QA14	Immunity protein 58	NA
UHGV-0188119_6	AcrCatalog	cluster_17974	NA	NA
UHGV-0188119_12	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0188119_12	PHROG	phrog_5889	NA	unknown function
UHGV-0188119_12	UniRef90	UniRef90_R0CVH9	HDc domain-containing protein	NA
UHGV-0188119_12	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0188119_12	Pfam	PF01966	HD domain	HD
UHGV-0188119_12	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0188119_12	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0188119_12	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0188119_13	PHROG	phrog_14970	NA	unknown function
UHGV-0188119_13	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0188119_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0188119_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0188119_14	PHROG	phrog_398	NA	unknown function
UHGV-0188119_14	UniRef90	UniRef90_UPI0011780B2F	putative HNHc nuclease	NA
UHGV-0188119_14	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0188119_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0188119_14	Structural annotation	PF16784	NA	NA
UHGV-0188119_15	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-0188119_15	Structural annotation	PF17457	NA	NA
UHGV-0188119_16	PHROG	phrog_2113	NA	unknown function
UHGV-0188119_16	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0188119_17	PHROG	phrog_15768	NA	unknown function
UHGV-0188119_17	UniRef90	UniRef90_R0D5K9	NA	NA
UHGV-0188119_17	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0188119_17	AcrCatalog	cluster_38323	NA	NA
UHGV-0188119_17	Pfam	PF19808	NA	DUF6291
UHGV-0188119_17	Structural annotation	PF19808	NA	NA
UHGV-0188119_18	PHROG	phrog_3502	NA	unknown function
UHGV-0188119_18	UniRef90	UniRef90_A0A3E2U401	LexA_DNA_bind domain-containing protein	NA
UHGV-0188119_18	eggNOG-mapper	86416.Clopa_4844	LexA DNA binding domain	NA
UHGV-0188119_18	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0188119_18	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0188119_18	Structural annotation	PF01726, MF_00732, TIGR00738, COG1959	NA	NA
UHGV-0188119_21	PHROG	phrog_4572	NA	unknown function
UHGV-0188119_21	eggNOG-mapper	411902.CLOBOL_05688	NA	NA
UHGV-0188119_22	PHROG	phrog_874	NA	unknown function
UHGV-0188119_22	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0188119_22	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0188119_22	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0188119_24	Structural annotation	NF008911	NA	NA
UHGV-0188119_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0188119_25	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0188119_25	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0188119_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0188119_25	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0188119_28	AcrCatalog	cluster_29173	NA	NA
UHGV-0188119_29	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0188119_29	AcrCatalog	cluster_11670	NA	NA
UHGV-0188119_32	PHROG	phrog_33130	NA	unknown function
UHGV-0188119_32	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0188119_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188119_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188119_33	UniRef90	UniRef90_UPI0013F5F138	helix-turn-helix domain-containing protein	NA
UHGV-0188119_33	eggNOG-mapper	1151292.QEW_3769	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188119_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0188119_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188119_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0188119_33	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0188119_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188119_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0188119_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0188119_34	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0188119_34	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0188119_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0188119_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0188119_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0188119_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188119_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188119_35	UniRef90	UniRef90_R0BLA8	PBSX family phage terminase, large subunit	NA
UHGV-0188119_35	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0188119_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188119_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188119_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188119_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188119_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188119_37	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0188119_37	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0188119_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188119_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188119_38	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0188119_38	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0188119_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188119_38	COG	COG2369	NA	NA
UHGV-0188119_38	Structural annotation	PF06152	NA	NA
UHGV-0188119_39	PHROG	phrog_3754	NA	unknown function
UHGV-0188119_39	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0188119_40	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0188119_40	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0188119_41	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0188119_41	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0188119_41	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0188119_42	PHROG	phrog_21718	NA	unknown function
UHGV-0188119_42	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0188119_43	PHROG	phrog_22984	NA	unknown function
UHGV-0188119_44	PHROG	phrog_16490	NA	unknown function
UHGV-0188119_44	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0188119_46	PHROG	phrog_20016	NA	unknown function
UHGV-0188119_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188119_47	PHROG	phrog_28802	NA	unknown function
UHGV-0188119_47	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0188119_49	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0188119_49	PHROG	phrog_2104	NA	unknown function
UHGV-0188119_49	UniRef90	UniRef90_R5F6L3	DNA-binding helix-turn-helix protein	NA
UHGV-0188119_49	eggNOG-mapper	471875.RUMLAC_02311	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188119_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188119_49	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0188119_50	AcrCatalog	cluster_27905	NA	NA
UHGV-0188119_51	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-0188119_51	eggNOG-mapper	476272.RUMHYD_01773	Cysteine-rich KTR	NA
UHGV-0188119_51	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0188119_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0188119_52	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0188119_52	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0188119_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0188119_52	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0188119_53	PHROG	phrog_247	major head protein	head and packaging
UHGV-0188119_53	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0188119_53	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0188119_53	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0188119_55	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188119_55	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0188119_56	PHROG	phrog_1129	holin	lysis
UHGV-0188119_56	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0188119_56	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0188119_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0188119_56	Structural annotation	PF06946	NA	NA
UHGV-0188119_57	PHROG	phrog_8680	NA	unknown function
UHGV-0188119_57	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0188119_57	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0188119_57	Pfam	PF14386	NA	DUF4417
UHGV-0188119_57	Structural annotation	PF14386	NA	NA
UHGV-0188119_59	PHROG	phrog_3366	NA	unknown function
UHGV-0188119_59	eggNOG-mapper	476272.RUMHYD_01779	NA	NA