UHGV-0188143

Genome information

Genome length 25,730 bps

CDS count 47

Completeness 64.94% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188143
vOTU ID	vOTU-022853
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2579965_a1_ct17622_vs1@Siphoviridae__sp._ctzPb1
BioSample	SAMEA2579965
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.79
Jumbo phage	No

Genome content
Genome length	25,730 bps
GC content	35.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.65%
Average CDS length	527.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188143_1	Structural annotation	COG4446	NA	NA
UHGV-0188143_4	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0188143_5	PHROG	phrog_8684	NA	unknown function
UHGV-0188143_5	UniRef90	UniRef90_G5HEN9	YopX domain-containing protein	NA
UHGV-0188143_5	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0188143_5	Pfam	PF09643	YopX protein	YopX
UHGV-0188143_5	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0188143_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0188143_7	UniRef90	UniRef90_A0A1Y4LYN3	NA	NA
UHGV-0188143_7	Pfam	PF04448	NA	DUF551
UHGV-0188143_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0188143_8	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188143_8	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0188143_8	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0188143_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188143_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188143_8	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0188143_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0188143_9	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0188143_9	UniRef90	UniRef90_A0A3A8RHV5	Cytosine-specific methyltransferase	NA
UHGV-0188143_9	eggNOG-mapper	1300150.EMQU_2511	C-5 cytosine-specific DNA methylase	NA
UHGV-0188143_9	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0188143_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0188143_9	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0188143_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0188143_9	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0188143_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188143_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188143_12	UniRef90	UniRef90_A0A316Q453	Single-stranded DNA-binding protein	NA
UHGV-0188143_12	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0188143_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188143_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188143_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188143_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188143_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0188143_14	PHROG	phrog_474	phosphofructokinase	other
UHGV-0188143_14	UniRef90	UniRef90_A0A316NLA2	NA	NA
UHGV-0188143_14	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0188143_14	Pfam	PF19905	NA	DUF6378
UHGV-0188143_14	Structural annotation	PF19905	NA	NA
UHGV-0188143_15	PHROG	phrog_25385	NA	unknown function
UHGV-0188143_15	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0188143_16	PHROG	phrog_4433	NA	unknown function
UHGV-0188143_16	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0188143_16	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0188143_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0188143_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188143_17	eggNOG-mapper	1121335.Clst_0378	NA	NA
UHGV-0188143_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0188143_18	PHROG	phrog_9804	NA	unknown function
UHGV-0188143_18	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0188143_18	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0188143_18	AcrCatalog	cluster_137185	NA	NA
UHGV-0188143_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0188143_18	Structural annotation	PF11417	NA	NA
UHGV-0188143_19	PHROG	phrog_15768	NA	unknown function
UHGV-0188143_19	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0188143_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0188143_20	PHROG	phrog_1389	NA	unknown function
UHGV-0188143_20	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0188143_20	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0188143_21	PHROG	phrog_7566	NA	unknown function
UHGV-0188143_21	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0188143_22	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188143_22	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0188143_22	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0188143_22	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0188143_23	PHROG	phrog_6244	NA	unknown function
UHGV-0188143_24	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0188143_24	UniRef90	UniRef90_A0A1C5T8N6	ERF superfamily	NA
UHGV-0188143_24	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0188143_24	Pfam	PF04404	ERF superfamily	ERF
UHGV-0188143_24	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0188143_30	UniRef90	UniRef90_A0A8G1TPP7	XRE family transcriptional regulator	NA
UHGV-0188143_30	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0188143_30	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0188143_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0188143_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0188143_31	UniRef90	UniRef90_A0A8G1TQH5	Helix-turn-helix domain-containing protein	NA
UHGV-0188143_31	eggNOG-mapper	1507.HMPREF0262_00168	Peptidase S24-like	NA
UHGV-0188143_31	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0188143_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0188143_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188143_31	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0188143_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188143_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0188143_33	UniRef90	UniRef90_UPI001C11D960	recombinase family protein	NA
UHGV-0188143_33	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0188143_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188143_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188143_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188143_33	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0188143_34	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0188143_35	eggNOG-mapper	1131462.DCF50_p1798	NA	NA
UHGV-0188143_37	PHROG	phrog_4105	NA	unknown function
UHGV-0188143_37	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0188143_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0188143_38	PHROG	phrog_3088	amidase	lysis
UHGV-0188143_38	UniRef90	UniRef90_A0A3E3JYJ7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0188143_38	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188143_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0188143_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0188143_38	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0188143_39	PHROG	phrog_263	holin	lysis
UHGV-0188143_39	UniRef90	UniRef90_R2QED9	SPP1 family holin	NA
UHGV-0188143_39	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-0188143_39	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0188143_39	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0188143_41	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0188143_42	Structural annotation	PF11192	NA	NA
UHGV-0188143_47	eggNOG-mapper	536233.CLO_1580	NA	NA