UHGV-0188195

Genome information

Genome length 32,900 bps

CDS count 56

Completeness 78.53% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188195
vOTU ID	vOTU-029748
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597669
BioSample	SAMN09781774
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.43
Jumbo phage	No

Genome content
Genome length	32,900 bps
GC content	53.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.44%
Average CDS length	559.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188195_1	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0188195_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188195_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188195_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0188195_3	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0188195_3	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0188195_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188195_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188195_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188195_3	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0188195_5	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0188195_5	Pfam	PF08681	NA	DUF1778
UHGV-0188195_5	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0188195_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0188195_7	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0188195_8	PHROG	phrog_16490	NA	unknown function
UHGV-0188195_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0188195_10	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0188195_11	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0188195_12	PHROG	phrog_608	holin	lysis
UHGV-0188195_12	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0188195_12	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0188195_12	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0188195_12	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0188195_13	PHROG	phrog_37604	NA	unknown function
UHGV-0188195_13	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0188195_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0188195_14	PHROG	phrog_291	endolysin	lysis
UHGV-0188195_14	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0188195_14	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0188195_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0188195_14	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0188195_14	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0188195_14	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0188195_18	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0188195_18	Structural annotation	PF07238	NA	NA
UHGV-0188195_19	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0188195_19	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0188195_20	PHROG	phrog_6616	tail protein	tail
UHGV-0188195_20	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0188195_20	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0188195_20	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0188195_21	PHROG	phrog_1194	NA	unknown function
UHGV-0188195_21	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0188195_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0188195_22	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0188195_22	COG	COG1511	NA	NA
UHGV-0188195_23	PHROG	phrog_706	NA	unknown function
UHGV-0188195_23	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0188195_23	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0188195_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188195_23	Structural annotation	PF06854	NA	NA
UHGV-0188195_24	PHROG	phrog_11299	NA	unknown function
UHGV-0188195_24	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0188195_24	Structural annotation	PF10666	NA	NA
UHGV-0188195_25	PHROG	phrog_3099	NA	unknown function
UHGV-0188195_25	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0188195_25	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0188195_26	PHROG	phrog_3266	tail completion	connector
UHGV-0188195_26	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0188195_26	Structural annotation	PF12691	NA	NA
UHGV-0188195_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188195_27	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0188195_27	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0188195_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188195_27	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0188195_28	PHROG	phrog_3366	NA	unknown function
UHGV-0188195_28	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0188195_28	Pfam	PF20536	NA	DUF6751
UHGV-0188195_28	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0188195_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188195_29	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0188195_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0188195_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0188195_30	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0188195_30	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0188195_30	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188195_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0188195_31	UniRef90	UniRef90_A0A4D6BD32	Capsid and scaffold protein	NA
UHGV-0188195_31	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0188195_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188195_33	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0188195_33	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-0188195_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188195_33	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0188195_33	COG	COG2369	NA	NA
UHGV-0188195_33	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0188195_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188195_34	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0188195_34	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0188195_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188195_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188195_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188195_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188195_35	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0188195_35	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0188195_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188195_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188195_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188195_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188195_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188195_37	PHROG	phrog_9479	NA	unknown function
UHGV-0188195_37	Structural annotation	PF15529	NA	NA
UHGV-0188195_39	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0188195_39	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0188195_39	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0188195_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0188195_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0188195_39	Pfam	PF14386	NA	DUF4417
UHGV-0188195_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0188195_39	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0188195_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0188195_40	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0188195_40	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0188195_40	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0188195_46	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0188195_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0188195_46	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0188195_46	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0188195_46	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0188195_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0188195_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0188195_46	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0188195_49	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0188195_50	UniRef90	UniRef90_UPI0011CA7CD2	NA	NA
UHGV-0188195_50	Pfam	PF04448	NA	DUF551
UHGV-0188195_50	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0188195_51	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0188195_51	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0188195_51	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0188195_51	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0188195_53	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188195_53	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0188195_53	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0188195_53	Structural annotation	PF17375	NA	NA
UHGV-0188195_54	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188195_54	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0188195_54	eggNOG-mapper	864702.OsccyDRAFT_0719	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0188195_54	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0188195_54	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0188195_55	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0188195_55	UniRef90	UniRef90_A0A7X5D119	Adenine methyltransferase	NA
UHGV-0188195_55	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0188195_55	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0188195_55	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0188195_55	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0188195_55	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0188195_56	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0188195_56	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0188195_56	Structural annotation	NF007410	NA	NA