UHGV-0188300

Genome information

Genome length 28,132 bps

CDS count 49

Completeness 76.65% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188300
vOTU ID	vOTU-027735
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA3951706_b1_ct104_vs2@Siphoviridae__sp._ctn28104@linear
BioSample	SAMEA3951706
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.76
Jumbo phage	No

Genome content
Genome length	28,132 bps
GC content	55.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.86%
Average CDS length	541.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188300_2	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0188300_2	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0188300_2	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0188300_4	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0188300_4	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0188300_4	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0188300_6	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188300_6	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0188300_6	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0188300_6	Pfam	PF06356	NA	DUF1064
UHGV-0188300_6	Structural annotation	PF06356	NA	NA
UHGV-0188300_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0188300_14	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0188300_14	UniRef90	UniRef90_A0A7X6XB28	Methyltransferase	NA
UHGV-0188300_14	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0188300_14	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0188300_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0188300_14	COG	COG0863	DNA modification methylase	NA
UHGV-0188300_14	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0188300_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188300_15	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0188300_15	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0188300_16	eggNOG-mapper	1007096.BAGW01000031_gene129	NA	NA
UHGV-0188300_16	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0188300_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188300_17	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0188300_17	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0188300_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188300_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188300_18	PHROG	phrog_1066	NA	unknown function
UHGV-0188300_18	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0188300_18	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0188300_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0188300_19	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0188300_19	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0188300_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0188300_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0188300_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0188300_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0188300_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0188300_20	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0188300_20	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0188300_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0188300_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0188300_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0188300_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0188300_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0188300_21	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0188300_21	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0188300_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0188300_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0188300_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0188300_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188300_22	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0188300_22	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0188300_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188300_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188300_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188300_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188300_23	PHROG	phrog_5223	neck protein	connector
UHGV-0188300_23	UniRef90	UniRef90_A0A6N8H2B4	DNA-packaging protein	NA
UHGV-0188300_23	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0188300_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0188300_24	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0188300_24	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0188300_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0188300_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0188300_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0188300_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0188300_25	eggNOG-mapper	649639.Bcell_2725	NA	NA
UHGV-0188300_25	Structural annotation	PF05657	NA	NA
UHGV-0188300_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0188300_26	Structural annotation	TIGR01725	NA	NA
UHGV-0188300_27	PHROG	phrog_88	major tail protein	tail
UHGV-0188300_27	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0188300_27	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0188300_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0188300_27	COG	COG5492	NA	NA
UHGV-0188300_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0188300_28	Structural annotation	PF11836	NA	NA
UHGV-0188300_29	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0188300_29	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0188300_29	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0188300_29	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0188300_29	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0188300_30	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0188300_30	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0188300_30	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0188300_30	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0188300_31	PHROG	phrog_26795	NA	unknown function
UHGV-0188300_31	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0188300_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0188300_32	PHROG	phrog_12764	NA	unknown function
UHGV-0188300_32	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0188300_33	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0188300_34	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-0188300_35	PHROG	phrog_13589	NA	unknown function
UHGV-0188300_35	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0188300_36	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0188300_37	PHROG	phrog_37900	NA	unknown function
UHGV-0188300_37	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0188300_37	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0188300_37	Pfam	PF19789	NA	DUF6273
UHGV-0188300_37	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0188300_37	Structural annotation	PF19789	NA	NA
UHGV-0188300_39	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0188300_40	PHROG	phrog_937	hemolysin	other
UHGV-0188300_40	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0188300_42	PHROG	phrog_13256	NA	unknown function
UHGV-0188300_42	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0188300_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188300_43	UniRef90	UniRef90_A0A7M1RYP7	HNH endonuclease	NA
UHGV-0188300_43	eggNOG-mapper	213777.R9R2C9_9CAUD	HNH endonuclease	NA
UHGV-0188300_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0188300_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0188300_43	Structural annotation	PF07463	NA	NA
UHGV-0188300_44	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0188300_44	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0188300_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0188300_44	Structural annotation	NF033743	NA	NA
UHGV-0188300_45	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0188300_46	PHROG	phrog_5783	NA	unknown function
UHGV-0188300_46	UniRef90	UniRef90_UPI0010308ECD	NYN domain-containing protein	NA
UHGV-0188300_46	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-0188300_46	Pfam	PF01936	NYN domain	NYN
UHGV-0188300_46	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0188300_46	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0188300_49	UniRef90	UniRef90_A0A8F1B662	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0188300_49	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA