UHGV-0188425

Genome information

Genome length 36,240 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188425
vOTU ID	vOTU-005989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598213
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.98
Jumbo phage	No

Genome content
Genome length	36,240 bps
GC content	57.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.00%
Average CDS length	492.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188425_3	PHROG	phrog_14030	NA	unknown function
UHGV-0188425_3	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0188425_3	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0188425_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0188425_4	PHROG	phrog_13256	NA	unknown function
UHGV-0188425_4	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0188425_5	PHROG	phrog_918	NA	unknown function
UHGV-0188425_5	UniRef90	UniRef90_UPI000F79A1D5	NA	NA
UHGV-0188425_5	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0188425_5	Pfam	PF19791	NA	DUF6275
UHGV-0188425_5	Structural annotation	PF19791	NA	NA
UHGV-0188425_7	PHROG	phrog_937	hemolysin	other
UHGV-0188425_7	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0188425_9	Structural annotation	PF14600	NA	NA
UHGV-0188425_11	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-0188425_11	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0188425_11	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0188425_11	COG	COG5492	NA	NA
UHGV-0188425_11	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0188425_13	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0188425_14	PHROG	phrog_10898	NA	unknown function
UHGV-0188425_14	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0188425_14	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0188425_14	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0188425_14	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0188425_16	Structural annotation	PF10651	NA	NA
UHGV-0188425_17	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0188425_18	PHROG	phrog_26795	NA	unknown function
UHGV-0188425_18	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0188425_18	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0188425_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0188425_19	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0188425_19	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0188425_19	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0188425_19	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0188425_20	PHROG	phrog_33680	NA	unknown function
UHGV-0188425_20	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0188425_20	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0188425_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0188425_20	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0188425_21	Structural annotation	PF11836	NA	NA
UHGV-0188425_22	PHROG	phrog_88	major tail protein	tail
UHGV-0188425_22	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0188425_22	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0188425_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0188425_22	COG	COG5492	NA	NA
UHGV-0188425_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0188425_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0188425_23	Structural annotation	TIGR01725	NA	NA
UHGV-0188425_24	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0188425_24	Structural annotation	PF05657	NA	NA
UHGV-0188425_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0188425_25	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-0188425_25	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0188425_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0188425_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0188425_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0188425_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0188425_26	PHROG	phrog_5223	neck protein	connector
UHGV-0188425_26	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0188425_26	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0188425_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188425_27	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0188425_27	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0188425_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188425_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188425_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188425_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188425_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0188425_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0188425_28	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0188425_28	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0188425_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0188425_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0188425_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0188425_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0188425_29	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0188425_29	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0188425_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0188425_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0188425_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0188425_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0188425_30	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0188425_30	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0188425_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0188425_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0188425_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0188425_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0188425_31	PHROG	phrog_1066	NA	unknown function
UHGV-0188425_31	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0188425_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0188425_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188425_32	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0188425_32	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0188425_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188425_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188425_33	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0188425_33	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0188425_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188425_34	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0188425_34	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0188425_40	Structural annotation	PF10013	NA	NA
UHGV-0188425_41	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188425_41	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0188425_41	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0188425_41	Pfam	PF06356	NA	DUF1064
UHGV-0188425_41	Structural annotation	PF06356	NA	NA
UHGV-0188425_47	PHROG	phrog_38832	NA	unknown function
UHGV-0188425_47	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0188425_47	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0188425_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0188425_48	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0188425_48	UniRef90	UniRef90_A0A401IT16	Methyltransferase	NA
UHGV-0188425_48	eggNOG-mapper	1327981.R9ZYG2_9CAUD	helicase activity	NA
UHGV-0188425_48	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0188425_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0188425_49	UniRef90	UniRef90_A0A1C5YXG3	Radical SAM superfamily	NA
UHGV-0188425_49	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0188425_49	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0188425_53	Structural annotation	PF05082	NA	NA
UHGV-0188425_58	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0188425_58	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0188425_58	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0188425_59	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0188425_59	Structural annotation	PF12286	NA	NA
UHGV-0188425_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188425_63	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0188425_63	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0188425_63	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0188425_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188425_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188425_63	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0188425_65	PHROG	phrog_10292	NA	unknown function
UHGV-0188425_65	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-0188425_65	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0188425_65	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0188425_65	Pfam	PF05154	TM2 domain	TM2
UHGV-0188425_65	COG	COG2314	NA	NA
UHGV-0188425_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188425_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188425_66	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0188425_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188425_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0188425_67	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0188425_67	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0188425_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188425_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0188425_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188425_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188425_67	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0188425_68	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0188425_68	eggNOG-mapper	1378168.N510_03079	NA	NA