UHGV-0188559

Genome information

Genome length 43,789 bps

CDS count 72

Completeness 95.91% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188559
vOTU ID	vOTU-075150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596876
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.26
Jumbo phage	No

Genome content
Genome length	43,789 bps
GC content	45.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.71%
Average CDS length	548.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188559_1	PHROG	phrog_27197	NA	unknown function
UHGV-0188559_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0188559_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0188559_1	Structural annotation	NF007410	NA	NA
UHGV-0188559_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0188559_4	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0188559_4	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0188559_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0188559_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0188559_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188559_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0188559_5	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0188559_5	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0188559_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188559_6	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0188559_6	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0188559_7	PHROG	phrog_7566	NA	unknown function
UHGV-0188559_7	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0188559_7	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0188559_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188559_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188559_8	UniRef90	UniRef90_UPI00047D3ADA	single-stranded DNA-binding protein	NA
UHGV-0188559_8	eggNOG-mapper	742740.HMPREF9474_02547	Single-stranded DNA-binding protein	NA
UHGV-0188559_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188559_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188559_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188559_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188559_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0188559_9	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0188559_9	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0188559_10	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188559_10	UniRef90	UniRef90_A0A6N7WNE3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0188559_10	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0188559_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0188559_10	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0188559_11	PHROG	phrog_1163	NA	unknown function
UHGV-0188559_11	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-0188559_11	eggNOG-mapper	1304866.K413DRAFT_1200	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0188559_11	AcrCatalog	cluster_38323	NA	NA
UHGV-0188559_11	Pfam	PF19808	NA	DUF6291
UHGV-0188559_11	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0188559_11	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0188559_11	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0188559_11	Structural annotation	PF19808	NA	NA
UHGV-0188559_12	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA
UHGV-0188559_13	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0188559_15	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0188559_15	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0188559_15	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0188559_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0188559_15	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0188559_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0188559_16	UniRef90	UniRef90_A0A3R6XYD6	NA	NA
UHGV-0188559_16	eggNOG-mapper	1125725.HMPREF1325_1838	NA	NA
UHGV-0188559_16	Pfam	PF14359	NA	DUF4406
UHGV-0188559_16	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0188559_16	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0188559_20	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188559_20	PHROG	phrog_95	integrase	integration and excision
UHGV-0188559_20	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0188559_20	eggNOG-mapper	1408437.JNJN01000023_gene2128	NA	NA
UHGV-0188559_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188559_20	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188559_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188559_20	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0188559_22	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0188559_22	UniRef90	UniRef90_A0A3R6KI17	Nucleotide pyrophosphohydrolase	NA
UHGV-0188559_22	eggNOG-mapper	1167632.AJTR01000055_gene145	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0188559_22	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0188559_22	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0188559_22	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0188559_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0188559_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0188559_23	UniRef90	UniRef90_A0A0R1P4L1	ParB-like protein	NA
UHGV-0188559_23	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0188559_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0188559_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0188559_23	COG	COG0863	DNA modification methylase	NA
UHGV-0188559_23	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0188559_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0188559_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0188559_24	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-0188559_24	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0188559_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0188559_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0188559_24	COG	COG0863	DNA modification methylase	NA
UHGV-0188559_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0188559_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188559_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188559_25	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0188559_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0188559_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188559_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188559_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188559_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188559_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188559_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188559_27	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0188559_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0188559_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188559_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188559_29	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0188559_29	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0188559_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188559_29	COG	COG2369	NA	NA
UHGV-0188559_29	Structural annotation	PF06152	NA	NA
UHGV-0188559_30	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0188559_30	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0188559_31	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0188559_31	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0188559_31	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0188559_32	PHROG	phrog_21718	NA	unknown function
UHGV-0188559_32	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0188559_34	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0188559_35	PHROG	phrog_20016	NA	unknown function
UHGV-0188559_35	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0188559_35	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0188559_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188559_36	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0188559_38	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0188559_38	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0188559_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0188559_38	Structural annotation	PF06810	NA	NA
UHGV-0188559_39	PHROG	phrog_247	major head protein	head and packaging
UHGV-0188559_39	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0188559_39	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0188559_39	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0188559_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188559_40	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0188559_42	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0188559_42	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0188559_43	PHROG	phrog_419	NA	unknown function
UHGV-0188559_43	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0188559_43	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0188559_43	Structural annotation	PF14083	NA	NA
UHGV-0188559_45	PHROG	phrog_9479	NA	unknown function
UHGV-0188559_45	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0188559_45	Structural annotation	PF15529	NA	NA
UHGV-0188559_46	Structural annotation	PF10819	NA	NA
UHGV-0188559_47	PHROG	phrog_8680	NA	unknown function
UHGV-0188559_47	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0188559_47	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0188559_47	Pfam	PF14386	NA	DUF4417
UHGV-0188559_47	Structural annotation	PF14386	NA	NA
UHGV-0188559_48	PHROG	phrog_3366	NA	unknown function
UHGV-0188559_48	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0188559_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0188559_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188559_50	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0188559_50	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0188559_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188559_50	Structural annotation	PF11114	NA	NA
UHGV-0188559_51	PHROG	phrog_3266	tail completion	connector
UHGV-0188559_51	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0188559_51	Structural annotation	PF12691	NA	NA
UHGV-0188559_52	PHROG	phrog_3099	NA	unknown function
UHGV-0188559_52	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0188559_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0188559_53	PHROG	phrog_11299	NA	unknown function
UHGV-0188559_53	eggNOG-mapper	476272.RUMHYD_01783	NA	NA
UHGV-0188559_53	Structural annotation	PF10666	NA	NA
UHGV-0188559_54	PHROG	phrog_706	NA	unknown function
UHGV-0188559_54	UniRef90	UniRef90_A0A1C5M8I2	Bacteriophage Gp15 protein	NA
UHGV-0188559_54	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0188559_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188559_54	Structural annotation	PF06854	NA	NA
UHGV-0188559_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0188559_55	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0188559_55	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0188559_55	COG	COG5412	Phage-related protein	NA
UHGV-0188559_55	Structural annotation	PF11172	NA	NA
UHGV-0188559_56	PHROG	phrog_1194	NA	unknown function
UHGV-0188559_56	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0188559_57	PHROG	phrog_6616	tail protein	tail
UHGV-0188559_57	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0188559_57	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0188559_57	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0188559_58	PHROG	phrog_18444	NA	unknown function
UHGV-0188559_59	PHROG	phrog_21765	NA	unknown function
UHGV-0188559_59	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0188559_60	PHROG	phrog_1129	holin	lysis
UHGV-0188559_60	UniRef90	UniRef90_UPI001C1096AE	phage holin family protein	NA
UHGV-0188559_60	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0188559_60	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0188559_60	Structural annotation	PF06946	NA	NA
UHGV-0188559_61	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0188559_61	PHROG	phrog_435	endolysin	lysis
UHGV-0188559_61	UniRef90	UniRef90_UPI00164BDABC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188559_61	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188559_61	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0188559_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188559_63	eggNOG-mapper	411473.RUMCAL_00410	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0188559_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0188559_66	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0188559_66	UniRef90	UniRef90_A0A143XQ54	DNA translocase FtsK	NA
UHGV-0188559_66	eggNOG-mapper	1469948.JPNB01000002_gene3197	Restriction endonuclease	NA
UHGV-0188559_66	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0188559_66	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0188559_66	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0188559_68	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0188559_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188559_68	UniRef90	UniRef90_A0A7U9X0U1	HTH cro/C1-type domain-containing protein	NA
UHGV-0188559_68	eggNOG-mapper	397291.C804_03448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188559_68	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0188559_68	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0188559_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188559_68	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA