UHGV-0188587

Genome information

Genome length 41,582 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188587
vOTU ID	vOTU-004523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597522
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.97
Jumbo phage	No

Genome content
Genome length	41,582 bps
GC content	55.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	88.87%
Average CDS length	563.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188587_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188587_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188587_2	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0188587_2	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0188587_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0188587_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188587_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0188587_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188587_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188587_3	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0188587_3	eggNOG-mapper	1232453.BAIF02000002_gene1302	helix-turn-helix	NA
UHGV-0188587_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188587_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188587_3	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0188587_7	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0188587_7	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0188587_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188587_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188587_7	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0188587_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188587_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0188587_8	UniRef90	UniRef90_A0A3A9ED02	Site-specific recombinase	NA
UHGV-0188587_8	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0188587_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188587_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188587_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188587_8	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0188587_9	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0188587_10	Structural annotation	PF12510	NA	NA
UHGV-0188587_11	PHROG	phrog_20016	NA	unknown function
UHGV-0188587_11	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0188587_11	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0188587_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188587_12	PHROG	phrog_16490	NA	unknown function
UHGV-0188587_12	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0188587_13	PHROG	phrog_22984	NA	unknown function
UHGV-0188587_14	PHROG	phrog_21718	NA	unknown function
UHGV-0188587_14	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0188587_15	PHROG	phrog_3754	NA	unknown function
UHGV-0188587_15	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0188587_17	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0188587_17	PHROG	phrog_435	endolysin	lysis
UHGV-0188587_17	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188587_17	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0188587_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0188587_17	Pfam	PF05036	SPOR domain	SPOR
UHGV-0188587_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188587_17	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0188587_18	PHROG	phrog_199	holin	lysis
UHGV-0188587_18	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0188587_18	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0188587_18	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0188587_18	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0188587_18	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0188587_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0188587_20	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0188587_20	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0188587_20	COG	COG4877	NA	NA
UHGV-0188587_20	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0188587_22	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0188587_22	PHROG	phrog_14824	NA	unknown function
UHGV-0188587_22	UniRef90	UniRef90_R6GIV0	Beta_helix domain-containing protein	NA
UHGV-0188587_22	eggNOG-mapper	1121920.AUAU01000019_gene2582	polygalacturonase activity	NA
UHGV-0188587_22	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0188587_22	COG	COG5434	Polygalacturonase	NA
UHGV-0188587_23	PHROG	phrog_372	tail protein	tail
UHGV-0188587_23	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0188587_23	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0188587_23	Pfam	PF05895	NA	DUF859
UHGV-0188587_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0188587_23	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0188587_24	PHROG	phrog_3558	tail protein	tail
UHGV-0188587_24	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-0188587_24	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0188587_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0188587_24	COG	COG4926	Phage-related protein	NA
UHGV-0188587_24	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0188587_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0188587_25	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0188587_25	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0188587_25	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0188587_26	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0188587_26	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0188587_26	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0188587_26	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0188587_28	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0188587_29	PHROG	phrog_885	major tail protein	tail
UHGV-0188587_29	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0188587_29	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0188587_29	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0188587_30	PHROG	phrog_17405	head protein	head and packaging
UHGV-0188587_30	Structural annotation	PF11367	NA	NA
UHGV-0188587_31	PHROG	phrog_17977	NA	unknown function
UHGV-0188587_31	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0188587_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0188587_33	PHROG	phrog_544	major head protein	head and packaging
UHGV-0188587_33	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0188587_33	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0188587_33	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0188587_34	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0188587_34	Structural annotation	PF06810	NA	NA
UHGV-0188587_35	Structural annotation	PF18152	NA	NA
UHGV-0188587_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0188587_36	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0188587_36	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0188587_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0188587_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0188587_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0188587_37	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0188587_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0188587_38	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0188587_38	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0188587_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0188587_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0188587_38	COG	COG2369	NA	NA
UHGV-0188587_39	PHROG	phrog_28328	NA	unknown function
UHGV-0188587_39	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0188587_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0188587_40	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0188587_40	eggNOG-mapper	608534.GCWU000341_02296	phage portal protein, SPP1	NA
UHGV-0188587_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188587_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0188587_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188587_41	PHROG	phrog_10250	NA	unknown function
UHGV-0188587_41	UniRef90	UniRef90_A0A8J6MB41	PBSX family phage terminase large subunit	NA
UHGV-0188587_41	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0188587_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0188587_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188587_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188587_41	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0188587_42	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0188587_42	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0188587_42	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0188587_42	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0188587_42	Structural annotation	PF16677	NA	NA
UHGV-0188587_44	eggNOG-mapper	537013.CLOSTMETH_03718	NA	NA
UHGV-0188587_44	Structural annotation	TIGR01636	NA	NA
UHGV-0188587_49	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0188587_49	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-0188587_49	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0188587_49	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0188587_49	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0188587_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0188587_50	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0188587_50	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0188587_50	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0188587_50	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0188587_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0188587_50	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0188587_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0188587_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0188587_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0188587_52	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0188587_52	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0188587_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0188587_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0188587_52	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0188587_54	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188587_54	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0188587_54	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0188587_54	Pfam	PF06356	NA	DUF1064
UHGV-0188587_54	Structural annotation	PF06356	NA	NA
UHGV-0188587_56	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0188587_56	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0188587_56	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0188587_56	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0188587_56	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0188587_56	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0188587_56	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0188587_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188587_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188587_58	UniRef90	UniRef90_A0A1Q6R0X3	Single-stranded DNA-binding protein	NA
UHGV-0188587_58	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0188587_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188587_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188587_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188587_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188587_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0188587_59	PHROG	phrog_7566	NA	unknown function
UHGV-0188587_59	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0188587_59	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0188587_60	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188587_60	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0188587_60	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0188587_60	Structural annotation	PF05772	NA	NA
UHGV-0188587_61	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0188587_61	UniRef90	UniRef90_UPI001D07A468	phage recombination protein Bet	NA
UHGV-0188587_61	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0188587_61	Pfam	PF03837	RecT family	RecT
UHGV-0188587_61	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0188587_61	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0188587_61	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0188587_62	PHROG	phrog_674	NA	unknown function
UHGV-0188587_62	UniRef90	UniRef90_UPI001D085352	NA	NA
UHGV-0188587_62	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-0188587_62	Pfam	PF07083	NA	DUF1351
UHGV-0188587_62	Structural annotation	PF07083	NA	NA
UHGV-0188587_63	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188587_63	UniRef90	UniRef90_UPI001D0928A0	YqaJ viral recombinase family protein	NA
UHGV-0188587_63	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0188587_63	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0188587_63	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0188587_63	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0188587_63	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0188587_66	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0188587_66	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA