UHGV-0188596

Genome information

Genome length 52,553 bps

CDS count 69

Completeness 90.22% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188596
vOTU ID	vOTU-081402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597521
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.96
Jumbo phage	No

Genome content
Genome length	52,553 bps
GC content	45.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.64%
Average CDS length	716.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188596_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188596_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0188596_1	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0188596_1	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0188596_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188596_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0188596_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188596_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188596_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0188596_2	PHROG	phrog_29674	NA	unknown function
UHGV-0188596_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188596_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188596_5	UniRef90	UniRef90_A0A1Q6R550	HTH cro/C1-type domain-containing protein	NA
UHGV-0188596_5	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188596_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188596_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188596_5	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0188596_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188596_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188596_6	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0188596_6	eggNOG-mapper	246199.CUS_7322	Helix-turn-helix	NA
UHGV-0188596_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188596_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188596_12	PHROG	phrog_14367	NA	unknown function
UHGV-0188596_12	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0188596_12	eggNOG-mapper	478749.BRYFOR_06242	LysM domain	NA
UHGV-0188596_12	Pfam	PF01476	LysM domain	LysM
UHGV-0188596_12	COG	COG1388	LysM repeat	NA
UHGV-0188596_12	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0188596_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0188596_15	UniRef90	UniRef90_A0A843HP81	ERF family protein	NA
UHGV-0188596_15	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0188596_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0188596_15	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0188596_16	PHROG	phrog_7566	NA	unknown function
UHGV-0188596_16	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0188596_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188596_17	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0188596_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0188596_18	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188596_18	UniRef90	UniRef90_A0A1Y4H7G4	Helix-turn-helix domain-containing protein (Fragment)	NA
UHGV-0188596_18	eggNOG-mapper	742741.HMPREF9475_03963	NA	NA
UHGV-0188596_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0188596_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0188596_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188596_19	eggNOG-mapper	1117958.PE143B_0130490	DnaD domain protein	NA
UHGV-0188596_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0188596_20	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0188596_20	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0188596_20	Structural annotation	PF11417	NA	NA
UHGV-0188596_26	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0188596_30	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0188596_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188596_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188596_32	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0188596_32	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0188596_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188596_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188596_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188596_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188596_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0188596_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188596_33	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0188596_33	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0188596_33	Pfam	PF06356	NA	DUF1064
UHGV-0188596_33	Structural annotation	PF06356	NA	NA
UHGV-0188596_34	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0188596_34	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0188596_35	PHROG	phrog_2329	NA	unknown function
UHGV-0188596_35	UniRef90	UniRef90_UPI001AEB4F95	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0188596_35	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-0188596_35	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0188596_35	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0188596_38	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0188596_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0188596_39	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0188596_39	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0188596_39	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0188596_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0188596_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0188596_39	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0188596_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188596_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188596_40	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0188596_40	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0188596_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188596_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188596_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188596_40	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188596_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0188596_41	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0188596_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-0188596_42	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0188596_42	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0188596_42	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0188596_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0188596_45	PHROG	phrog_334	major head protein	head and packaging
UHGV-0188596_45	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0188596_45	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0188596_45	Pfam	PF13252	NA	DUF4043
UHGV-0188596_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0188596_45	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188596_46	PHROG	phrog_399	structural protein	head and packaging
UHGV-0188596_46	Pfam	PF20387	NA	DUF6682
UHGV-0188596_46	Structural annotation	PF20387	NA	NA
UHGV-0188596_47	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0188596_47	UniRef90	UniRef90_A0A1G6NQU3	Flagellin FlgL	NA
UHGV-0188596_47	eggNOG-mapper	1111454.HMPREF1250_0263	cellulase activity	NA
UHGV-0188596_47	COG	COG1511	NA	NA
UHGV-0188596_48	PHROG	phrog_2427	NA	unknown function
UHGV-0188596_50	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0188596_50	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0188596_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0188596_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0188596_51	Structural annotation	PF16116	NA	NA
UHGV-0188596_52	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0188596_52	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0188596_52	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0188596_52	Pfam	PF14301	NA	DUF4376
UHGV-0188596_52	Structural annotation	PF14301	NA	NA
UHGV-0188596_53	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0188596_53	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0188596_54	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0188596_55	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0188596_55	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0188596_57	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0188596_57	UniRef90	UniRef90_A0A1A8Y0L6	LPD38 domain-containing protein	NA
UHGV-0188596_57	eggNOG-mapper	278957.ABEA03000004_gene4552	DEAD-like helicases superfamily	NA
UHGV-0188596_57	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0188596_57	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0188596_57	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0188596_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0188596_57	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0188596_57	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0188596_60	PHROG	phrog_918	NA	unknown function
UHGV-0188596_60	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0188596_60	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0188596_60	Pfam	PF19791	NA	DUF6275
UHGV-0188596_60	Structural annotation	PF19791	NA	NA
UHGV-0188596_61	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0188596_61	Structural annotation	PF21277	NA	NA
UHGV-0188596_64	PHROG	phrog_21718	NA	unknown function
UHGV-0188596_65	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0188596_66	PHROG	phrog_16490	NA	unknown function
UHGV-0188596_66	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0188596_67	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188596_67	UniRef90	UniRef90_A0A8J6Z2K3	HNH endonuclease	NA
UHGV-0188596_67	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0188596_67	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0188596_67	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0188596_67	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0188596_67	Structural annotation	PF07463, PF02796	NA	NA
UHGV-0188596_68	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0188596_68	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188596_69	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0188596_69	eggNOG-mapper	1378168.N510_03079	NA	NA