UHGV-0188601

Genome information

Genome length 31,956 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188601
vOTU ID	vOTU-004525
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595940
BioSample	SAMN09781778
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.54
Jumbo phage	No

Genome content
Genome length	31,956 bps
GC content	41.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.43%
Average CDS length	501.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188601_3	PHROG	phrog_21718	NA	unknown function
UHGV-0188601_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0188601_5	Pfam	PF08279	HTH domain	HTH_11
UHGV-0188601_5	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0188601_8	PHROG	phrog_13256	NA	unknown function
UHGV-0188601_8	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0188601_9	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0188601_9	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0188601_9	UniRef90	UniRef90_A0A349HRK9	Peptidase_M23 domain-containing protein	NA
UHGV-0188601_9	eggNOG-mapper	411483.FAEPRAA2165_02394	Peptidase family M23	NA
UHGV-0188601_9	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0188601_9	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0188601_9	Structural annotation	PF01551, NF040883, COG2190	NA	NA
UHGV-0188601_10	eggNOG-mapper	635013.TherJR_2871	alginic acid biosynthetic process	NA
UHGV-0188601_10	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0188601_10	COG	COG3420	Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains	NA
UHGV-0188601_10	Structural annotation	PF00112, PF00395, COG4870	NA	NA
UHGV-0188601_15	PHROG	phrog_1194	NA	unknown function
UHGV-0188601_15	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0188601_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0188601_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0188601_16	eggNOG-mapper	1231377.C426_2221	phage tail tape measure protein	NA
UHGV-0188601_16	COG	COG5412	Phage-related protein	NA
UHGV-0188601_17	PHROG	phrog_706	NA	unknown function
UHGV-0188601_17	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0188601_17	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0188601_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188601_17	Structural annotation	PF06854	NA	NA
UHGV-0188601_18	PHROG	phrog_11299	NA	unknown function
UHGV-0188601_18	Structural annotation	PF10666	NA	NA
UHGV-0188601_19	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0188601_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188601_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188601_20	Structural annotation	PF11114	NA	NA
UHGV-0188601_21	Structural annotation	PF16724	NA	NA
UHGV-0188601_22	Structural annotation	PF20536	NA	NA
UHGV-0188601_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188601_24	PHROG	phrog_267	major head protein	head and packaging
UHGV-0188601_24	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0188601_24	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188601_25	Structural annotation	PF06810	NA	NA
UHGV-0188601_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188601_27	UniRef90	UniRef90_UPI001958D166	phage minor capsid protein	NA
UHGV-0188601_27	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0188601_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188601_27	COG	COG2369	NA	NA
UHGV-0188601_27	Structural annotation	PF06152	NA	NA
UHGV-0188601_28	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0188601_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0188601_28	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0188601_30	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0188601_31	PHROG	phrog_98	NA	unknown function
UHGV-0188601_31	UniRef90	UniRef90_A0A846I2Q9	YopX domain-containing protein	NA
UHGV-0188601_31	eggNOG-mapper	431943.CKL_3302	YopX protein	NA
UHGV-0188601_31	Pfam	PF09643	YopX protein	YopX
UHGV-0188601_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0188601_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0188601_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188601_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0188601_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188601_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0188601_38	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0188601_38	eggNOG-mapper	1007096.BAGW01000022_gene2657	Terminase-like family	NA
UHGV-0188601_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0188601_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188601_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188601_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0188601_40	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0188601_40	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0188601_40	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0188601_41	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188601_41	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0188601_41	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0188601_41	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0188601_44	PHROG	phrog_9804	NA	unknown function
UHGV-0188601_44	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0188601_44	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0188601_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0188601_44	Structural annotation	PF11417	NA	NA
UHGV-0188601_45	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188601_45	UniRef90	UniRef90_U3PDU2	Putative DNA replication protein	NA
UHGV-0188601_45	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-0188601_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0188601_45	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0188601_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188601_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188601_46	UniRef90	UniRef90_A0A843GZQ5	Single-stranded DNA-binding protein	NA
UHGV-0188601_46	eggNOG-mapper	428125.CLOLEP_03546	Single-stranded DNA-binding protein	NA
UHGV-0188601_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188601_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188601_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188601_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188601_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0188601_48	PHROG	phrog_4973	NA	unknown function
UHGV-0188601_48	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0188601_48	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0188601_48	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0188601_48	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0188601_49	PHROG	phrog_7566	NA	unknown function
UHGV-0188601_49	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0188601_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188601_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0188601_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0188601_50	Pfam	PF05772	NinB protein	NinB
UHGV-0188601_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0188601_51	PHROG	phrog_16304	NA	unknown function
UHGV-0188601_51	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0188601_51	Pfam	PF19808	NA	DUF6291
UHGV-0188601_52	PHROG	phrog_16304	NA	unknown function
UHGV-0188601_52	Pfam	PF19808	NA	DUF6291
UHGV-0188601_53	PHROG	phrog_14970	NA	unknown function
UHGV-0188601_53	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0188601_53	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0188601_53	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0188601_53	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0188601_53	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0188601_55	PHROG	phrog_22529	NA	unknown function
UHGV-0188601_55	UniRef90	UniRef90_A0A7V6W4M6	3D domain-containing protein	NA
UHGV-0188601_55	eggNOG-mapper	1392493.JIAB01000001_gene1928	3D domain	NA
UHGV-0188601_55	Pfam	PF06725	3D domain	3D
UHGV-0188601_55	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0188601_55	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0188601_58	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0188601_59	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188601_60	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA