UHGV-0188612

Genome information

Genome length 40,586 bps

CDS count 74

Completeness 100.00% (complete)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188612
vOTU ID	vOTU-047025
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595945
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.15
Jumbo phage	No

Genome content
Genome length	40,586 bps
GC content	53.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	90.90%
Average CDS length	503.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188612_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188612_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188612_2	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0188612_2	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0188612_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188612_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188612_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0188612_3	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0188612_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0188612_5	PHROG	phrog_32087	NA	unknown function
UHGV-0188612_5	UniRef90	UniRef90_UPI001A9BF0E5	NA	NA
UHGV-0188612_5	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0188612_5	Pfam	PF06356	NA	DUF1064
UHGV-0188612_6	PHROG	phrog_38832	NA	unknown function
UHGV-0188612_6	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0188612_8	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0188612_8	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0188612_8	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0188612_8	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0188612_8	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0188612_8	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0188612_8	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0188612_9	Pfam	PF04448	NA	DUF551
UHGV-0188612_10	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0188612_10	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0188612_10	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0188612_10	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0188612_10	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0188612_10	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0188612_10	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0188612_11	PHROG	phrog_16304	NA	unknown function
UHGV-0188612_11	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0188612_11	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0188612_11	Pfam	PF19808	NA	DUF6291
UHGV-0188612_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188612_11	Structural annotation	PF19808	NA	NA
UHGV-0188612_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188612_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188612_13	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0188612_13	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0188612_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188612_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188612_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188612_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188612_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0188612_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0188612_14	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188612_14	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0188612_14	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0188612_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188612_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0188612_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188612_15	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0188612_15	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0188612_15	Structural annotation	PF05772	NA	NA
UHGV-0188612_16	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188612_16	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0188612_16	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0188612_16	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0188612_19	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0188612_20	PHROG	phrog_22529	NA	unknown function
UHGV-0188612_20	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0188612_20	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-0188612_20	Pfam	PF06725	3D domain	3D
UHGV-0188612_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0188612_20	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0188612_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188612_22	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0188612_22	eggNOG-mapper	1384066.JAGT01000001_gene193	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0188612_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188612_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188612_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0188612_25	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0188612_25	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0188612_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0188612_26	Structural annotation	PF03885	NA	NA
UHGV-0188612_30	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0188612_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188612_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188612_30	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0188612_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188612_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0188612_31	UniRef90	UniRef90_A0A3A9ED02	Site-specific recombinase	NA
UHGV-0188612_31	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0188612_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188612_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188612_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188612_31	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0188612_32	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0188612_33	PHROG	phrog_28802	NA	unknown function
UHGV-0188612_34	PHROG	phrog_20016	NA	unknown function
UHGV-0188612_34	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0188612_34	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0188612_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188612_36	PHROG	phrog_16490	NA	unknown function
UHGV-0188612_36	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0188612_37	PHROG	phrog_22984	NA	unknown function
UHGV-0188612_38	PHROG	phrog_21718	NA	unknown function
UHGV-0188612_38	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0188612_39	PHROG	phrog_3754	NA	unknown function
UHGV-0188612_39	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0188612_41	PHROG	phrog_21357	endolysin	lysis
UHGV-0188612_41	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0188612_41	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0188612_41	COG	COG1388	LysM repeat	NA
UHGV-0188612_41	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0188612_42	PHROG	phrog_13256	NA	unknown function
UHGV-0188612_42	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0188612_43	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0188612_43	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0188612_44	PHROG	phrog_937	hemolysin	other
UHGV-0188612_44	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0188612_47	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0188612_47	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0188612_49	PHROG	phrog_13589	NA	unknown function
UHGV-0188612_49	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0188612_50	PHROG	phrog_31538	NA	unknown function
UHGV-0188612_51	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0188612_53	PHROG	phrog_32744	NA	unknown function
UHGV-0188612_53	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0188612_53	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0188612_54	PHROG	phrog_1194	NA	unknown function
UHGV-0188612_54	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0188612_54	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0188612_55	PHROG	phrog_23464	NA	unknown function
UHGV-0188612_55	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0188612_55	COG	COG1511	NA	NA
UHGV-0188612_55	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0188612_57	PHROG	phrog_706	NA	unknown function
UHGV-0188612_57	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0188612_57	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0188612_57	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188612_57	Structural annotation	PF06854	NA	NA
UHGV-0188612_58	PHROG	phrog_11299	NA	unknown function
UHGV-0188612_58	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0188612_58	Structural annotation	PF10666	NA	NA
UHGV-0188612_59	PHROG	phrog_3099	NA	unknown function
UHGV-0188612_59	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0188612_59	Structural annotation	TIGR02126	NA	NA
UHGV-0188612_60	PHROG	phrog_3266	tail completion	connector
UHGV-0188612_60	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0188612_60	Structural annotation	PF12691	NA	NA
UHGV-0188612_61	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188612_61	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0188612_61	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0188612_61	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188612_61	Structural annotation	PF11114	NA	NA
UHGV-0188612_62	PHROG	phrog_3366	NA	unknown function
UHGV-0188612_62	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0188612_62	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0188612_63	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188612_63	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0188612_64	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188612_64	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0188612_64	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0188612_64	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188612_64	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188612_64	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188612_64	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188612_65	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0188612_65	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0188612_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0188612_66	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0188612_66	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0188612_66	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0188612_66	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0188612_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0188612_66	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0188612_68	PHROG	phrog_3896	NA	unknown function
UHGV-0188612_68	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0188612_69	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188612_69	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0188612_69	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0188612_69	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188612_69	COG	COG2369	NA	NA
UHGV-0188612_69	Structural annotation	PF06152	NA	NA
UHGV-0188612_70	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188612_70	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0188612_70	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0188612_70	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188612_70	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188612_71	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188612_71	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0188612_71	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0188612_71	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0188612_71	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0188612_71	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188612_71	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188612_71	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0188612_72	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0188612_72	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0188612_72	Structural annotation	PF13542	NA	NA
UHGV-0188612_73	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0188612_73	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-0188612_73	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0188612_73	eggNOG-mapper	592010.GCWU000182_001827	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0188612_73	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0188612_73	Structural annotation	PF20473, NF041658	NA	NA