UHGV-0188666

Genome information

Genome length 27,350 bps

CDS count 45

Completeness 80.53% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188666
vOTU ID	vOTU-022877
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737837_a1_ct6483_vs1@Siphoviridae__sp._ctmS21
BioSample	SAMEA2737837
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.3
Jumbo phage	No

Genome content
Genome length	27,350 bps
GC content	28.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	85.99%
Average CDS length	523.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188666_1	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-0188666_1	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0188666_2	UniRef90	UniRef90_A0A1Q6L7Q8	NOB1_Zn_bind domain-containing protein	NA
UHGV-0188666_2	Pfam	PF08772	Nin one binding (NOB1) Zn-ribbon like	NOB1_Zn_bind
UHGV-0188666_2	Structural annotation	PF09947	NA	NA
UHGV-0188666_5	PHROG	phrog_24552	NA	unknown function
UHGV-0188666_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0188666_11	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0188666_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188666_15	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0188666_15	UniRef90	UniRef90_R6XV26	Phage terminase	NA
UHGV-0188666_15	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0188666_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188666_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188666_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188666_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188666_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188666_16	UniRef90	UniRef90_A0A3A4W1Z3	Phage portal protein	NA
UHGV-0188666_16	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0188666_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188666_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188666_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188666_17	UniRef90	UniRef90_K1TV07	Phage minor capsid protein 2 (Fragment)	NA
UHGV-0188666_17	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0188666_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188666_17	COG	COG2369	NA	NA
UHGV-0188666_17	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0188666_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0188666_18	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0188666_18	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0188666_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0188666_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0188666_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0188666_19	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0188666_19	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0188666_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0188666_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188666_22	PHROG	phrog_3266	tail completion	connector
UHGV-0188666_22	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-0188666_22	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-0188666_22	Structural annotation	PF12691	NA	NA
UHGV-0188666_23	PHROG	phrog_3099	NA	unknown function
UHGV-0188666_23	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0188666_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0188666_24	PHROG	phrog_4450	NA	unknown function
UHGV-0188666_24	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0188666_24	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0188666_24	Pfam	PF20378	NA	DUF6673
UHGV-0188666_24	Structural annotation	PF20378	NA	NA
UHGV-0188666_25	PHROG	phrog_706	NA	unknown function
UHGV-0188666_25	UniRef90	UniRef90_UPI00189B9FA2	bacteriophage Gp15 family protein	NA
UHGV-0188666_25	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0188666_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188666_25	Structural annotation	PF06854	NA	NA
UHGV-0188666_26	PHROG	phrog_10772	NA	unknown function
UHGV-0188666_26	UniRef90	UniRef90_U2K339	TM2 domain protein	NA
UHGV-0188666_26	eggNOG-mapper	411473.RUMCAL_03485	TM2 domain	NA
UHGV-0188666_26	Pfam	PF05154	TM2 domain	TM2
UHGV-0188666_26	COG	COG2314	NA	NA
UHGV-0188666_26	Structural annotation	PF05154, COG2314	NA	NA
UHGV-0188666_27	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0188666_27	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0188666_28	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0188666_28	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-0188666_28	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0188666_28	COG	COG1511	NA	NA
UHGV-0188666_33	PHROG	phrog_24267	NA	unknown function
UHGV-0188666_33	UniRef90	UniRef90_A0A516MEW9	Putative baseplate wedge protein	NA
UHGV-0188666_33	eggNOG-mapper	759913.SDSE_1498	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0188666_33	COG	COG4675	Phage tail collar domain	NA
UHGV-0188666_33	Structural annotation	COG4675	NA	NA
UHGV-0188666_34	Structural annotation	TIGR03711	NA	NA
UHGV-0188666_36	PHROG	phrog_4105	NA	unknown function
UHGV-0188666_36	eggNOG-mapper	1336234.JAGN01000004_gene511	NA	NA
UHGV-0188666_37	PHROG	phrog_443	holin	lysis
UHGV-0188666_37	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-0188666_37	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0188666_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0188666_37	Structural annotation	PF16945	NA	NA
UHGV-0188666_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0188666_38	PHROG	phrog_9611	endolysin	lysis
UHGV-0188666_38	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0188666_38	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0188666_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0188666_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0188666_38	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0188666_39	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188666_39	UniRef90	UniRef90_UPI000BFD3BF6	NUMOD4 domain-containing protein	NA
UHGV-0188666_39	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0188666_39	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0188666_39	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0188666_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0188666_39	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0188666_39	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0188666_42	Pfam	PF04647	Accessory gene regulator B	AgrB
UHGV-0188666_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188666_43	COG	COG1426	NA	NA
UHGV-0188666_43	Structural annotation	PF01381, NF010465, COG1476	NA	NA
UHGV-0188666_45	KOfam	K01537	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]	NA
UHGV-0188666_45	PHROG	phrog_12316	ATPase	other
UHGV-0188666_45	UniRef90	UniRef90_A0A7X7LK32	ATPase (Fragment)	NA
UHGV-0188666_45	eggNOG-mapper	526218.Sterm_0188	NA	NA
UHGV-0188666_45	Pfam	PF00690	Cation transporter/ATPase, N-terminus	Cation_ATPase_N
UHGV-0188666_45	COG	COG0474	Magnesium-transporting ATPase (P-type)	NA