UHGV-0188921

Genome information

Genome length 41,390 bps

CDS count 51

Completeness 99.56% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188921
vOTU ID	vOTU-007594
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737728_b1_ct63_vs2@Caudovirales__sp._ctm5763@linear
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	28
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	135.88
Jumbo phage	No

Genome content
Genome length	41,390 bps
GC content	43.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.03%
Average CDS length	732.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188921_1	UniRef90	UniRef90_A0A2N6AK96	Macrolide ABC transporter permease (Fragment)	NA
UHGV-0188921_1	eggNOG-mapper	1262914.BN533_00388	Efflux ABC transporter permease protein	NA
UHGV-0188921_1	COG	COG0577	ABC-type antimicrobial peptide transport system, permease component	NA
UHGV-0188921_3	KOfam	K06890	NA	NA
UHGV-0188921_3	UniRef90	UniRef90_A0A3G9GR50	BAX inhibitor (BI)-1/YccA family protein	NA
UHGV-0188921_3	eggNOG-mapper	1262914.BN533_00393	Belongs to the BI1 family	NA
UHGV-0188921_3	Pfam	PF01027	Inhibitor of apoptosis-promoting Bax1	Bax1-I
UHGV-0188921_3	COG	COG0670	Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family	NA
UHGV-0188921_3	Structural annotation	PF01027, NF007765, COG0670	NA	NA
UHGV-0188921_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0188921_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0188921_5	Structural annotation	PF03895	NA	NA
UHGV-0188921_6	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0188921_6	UniRef90	UniRef90_UPI0018D4EE25	phage terminase large subunit	NA
UHGV-0188921_6	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0188921_6	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0188921_6	COG	COG5410	NA	NA
UHGV-0188921_6	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0188921_6	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0188921_8	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0188921_8	PHROG	phrog_894	endolysin	lysis
UHGV-0188921_8	UniRef90	UniRef90_A0A316S4M0	Peptidase M15	NA
UHGV-0188921_8	eggNOG-mapper	349161.Dred_0511	Peptidase M15A	NA
UHGV-0188921_8	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0188921_8	COG	COG3108	NA	NA
UHGV-0188921_8	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0188921_9	PHROG	phrog_920	holin	lysis
UHGV-0188921_9	UniRef90	UniRef90_A0A1M6NKZ0	Phage holin T7 family, holin superfamily II	NA
UHGV-0188921_9	Pfam	PF10746	Phage holin T7 family, holin superfamily II	Phage_holin_2_2
UHGV-0188921_10	PHROG	phrog_2837	tail protein	tail
UHGV-0188921_10	UniRef90	UniRef90_UPI001032C079	NA	NA
UHGV-0188921_10	Pfam	PF14301	NA	DUF4376
UHGV-0188921_12	PHROG	phrog_6256	tail fiber protein	tail
UHGV-0188921_12	UniRef90	UniRef90_UPI001E3381C0	phage tail fiber protein	NA
UHGV-0188921_12	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0188921_12	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0188921_13	PHROG	phrog_9854	NA	unknown function
UHGV-0188921_13	UniRef90	UniRef90_UPI000A807704	glucosaminidase domain-containing protein	NA
UHGV-0188921_13	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0188921_13	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0188921_13	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0188921_14	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0188921_14	UniRef90	UniRef90_UPI001032FD1D	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0188921_14	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-0188921_14	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0188921_14	Structural annotation	PF08291, MF_04122	NA	NA
UHGV-0188921_15	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0188921_15	UniRef90	UniRef90_A0A2Z2UAN6	Putative internal virion protein B	NA
UHGV-0188921_15	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-0188921_15	Structural annotation	PF05384, TIGR02559, COG5034	NA	NA
UHGV-0188921_16	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0188921_16	UniRef90	UniRef90_UPI001032CF49	NA	NA
UHGV-0188921_16	eggNOG-mapper	1028800.RG540_CH13890	NA	NA
UHGV-0188921_16	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0188921_16	Structural annotation	PF11090, MF_02210, NF040502, COG1247	NA	NA
UHGV-0188921_17	PHROG	phrog_457	tail protein	tail
UHGV-0188921_17	UniRef90	UniRef90_F1D037	Tail tubular protein B	NA
UHGV-0188921_17	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-0188921_17	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0188921_18	PHROG	phrog_446	tail protein	tail
UHGV-0188921_18	UniRef90	UniRef90_UPI001032D6E0	phage tail protein	NA
UHGV-0188921_18	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0188921_18	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0188921_18	Structural annotation	PF17212	NA	NA
UHGV-0188921_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0188921_19	UniRef90	UniRef90_UPI001032B69C	phage capsid protein	NA
UHGV-0188921_19	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0188921_19	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0188921_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188921_20	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0188921_20	UniRef90	UniRef90_A0A1M6MGQ8	Phage T7 capsid assembly protein	NA
UHGV-0188921_20	eggNOG-mapper	913183.E5RV18_9CAUD	viral capsid assembly	NA
UHGV-0188921_20	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0188921_20	Structural annotation	PF05396	NA	NA
UHGV-0188921_21	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0188921_21	UniRef90	UniRef90_UPI0010328CD7	portal protein	NA
UHGV-0188921_21	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0188921_21	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0188921_21	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0188921_23	UniRef90	UniRef90_UPI0010329CDC	NA	NA
UHGV-0188921_23	Pfam	PF17570	Bacteriophage T7-like, protein 6.7	T7-like_gp67
UHGV-0188921_24	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0188921_24	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0188921_24	UniRef90	UniRef90_UPI001559D946	T7 exonuclease	NA
UHGV-0188921_24	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0188921_24	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0188921_24	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0188921_24	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0188921_25	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0188921_25	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0188921_25	UniRef90	UniRef90_A0A316SF06	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0188921_25	eggNOG-mapper	329254.Q2NPG1_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0188921_25	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0188921_25	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0188921_25	Structural annotation	PF01068, PF14743, MF_00407, NF006592, COG1793	NA	NA
UHGV-0188921_27	UniRef90	UniRef90_A0A316S2X1	Ferredoxin:thioredoxin reductase	NA
UHGV-0188921_27	Pfam	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	FeThRed_B
UHGV-0188921_27	COG	COG4802	Ferredoxin-thioredoxin reductase, catalytic subunit	NA
UHGV-0188921_29	PHROG	phrog_6234	host RecBCD nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0188921_31	PHROG	phrog_22529	NA	unknown function
UHGV-0188921_31	UniRef90	UniRef90_UPI001032DAAE	3D domain-containing protein	NA
UHGV-0188921_31	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0188921_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0188921_31	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0188921_32	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0188921_32	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-0188921_32	UniRef90	UniRef90_A0A2R7SF63	POLAc domain-containing protein	NA
UHGV-0188921_32	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0188921_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0188921_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0188921_33	KOfam	K18960	gp49; recombination endonuclease VII	NA
UHGV-0188921_33	PHROG	phrog_2633	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0188921_33	UniRef90	UniRef90_UPI001032F93C	endonuclease VII domain-containing protein	NA
UHGV-0188921_33	eggNOG-mapper	484895.A9J6Z9_BPLUZ	endonuclease activity	NA
UHGV-0188921_33	Pfam	PF02945	Recombination endonuclease VII	Endonuclease_7
UHGV-0188921_33	Structural annotation	PF02945	NA	NA
UHGV-0188921_34	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0188921_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0188921_34	UniRef90	UniRef90_UPI001E614887	DNA polymerase	NA
UHGV-0188921_34	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0188921_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0188921_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0188921_34	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0188921_36	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0188921_36	PHROG	phrog_25611	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0188921_36	UniRef90	UniRef90_UPI001032A7A3	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0188921_36	eggNOG-mapper	1250005.PHEL85_1084	Ribonucleoside-triphosphate reductase	NA
UHGV-0188921_36	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0188921_36	NCBIFam	TIGR02827.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0188921_36	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0188921_36	Structural annotation	PF13597, MF_04027, TIGR02827, COG1328	NA	NA
UHGV-0188921_37	UniRef90	UniRef90_A0A1M6MEZ2	Anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0188921_37	eggNOG-mapper	1064535.MELS_1941	queuosine metabolic process	NA
UHGV-0188921_37	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0188921_38	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0188921_38	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0188921_38	UniRef90	UniRef90_UPI001032A3A2	AAA family ATPase	NA
UHGV-0188921_38	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0188921_38	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0188921_38	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0188921_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0188921_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0188921_38	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0188921_38	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0188921_39	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0188921_39	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188921_39	UniRef90	UniRef90_UPI0010328C79	endonuclease I	NA
UHGV-0188921_39	eggNOG-mapper	913183.E5RV06_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-0188921_39	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0188921_39	Structural annotation	PF05367, TIGR04256, COG4998	NA	NA
UHGV-0188921_40	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0188921_40	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0188921_40	UniRef90	UniRef90_UPI001032DD43	NA	NA
UHGV-0188921_40	eggNOG-mapper	910314.HMPREF9220_0740	NA	NA
UHGV-0188921_40	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0188921_40	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0188921_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0188921_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0188921_41	UniRef90	UniRef90_UPI0010329BEF	dUTP diphosphatase	NA
UHGV-0188921_41	eggNOG-mapper	879305.HMPREF9290_1342	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0188921_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-0188921_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0188921_41	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0188921_42	PHROG	phrog_236	nucleotide kinase	other
UHGV-0188921_42	UniRef90	UniRef90_UPI001032BA9D	NA	NA
UHGV-0188921_42	eggNOG-mapper	1432658.V5UQP0_9CAUD	NA	NA
UHGV-0188921_42	Pfam	PF11753	NA	DUF3310
UHGV-0188921_42	Structural annotation	PF11753, PF18350	NA	NA
UHGV-0188921_43	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0188921_43	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0188921_43	UniRef90	UniRef90_A0A316S4Q1	DNA-directed RNA polymerase	NA
UHGV-0188921_43	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0188921_43	Pfam	PF14700	DNA-directed RNA polymerase N-terminal	RPOL_N
UHGV-0188921_43	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0188921_43	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0188921_43	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-0188921_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0188921_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0188921_44	UniRef90	UniRef90_UPI001032EA2E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0188921_44	eggNOG-mapper	411490.ANACAC_00755	BRO family, N-terminal domain	NA
UHGV-0188921_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0188921_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0188921_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0188921_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0188921_48	UniRef90	UniRef90_A0A380K2T9	ICESt1 ORFI	NA
UHGV-0188921_50	Structural annotation	PF20075, TIGR02612	NA	NA