UHGV-0188923

Genome information

Genome length 40,658 bps

CDS count 65

Completeness 88.62% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188923
vOTU ID	vOTU-029806
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597100
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.23
Jumbo phage	No

Genome content
Genome length	40,658 bps
GC content	55.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.31%
Average CDS length	568.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188923_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188923_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188923_1	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0188923_1	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0188923_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188923_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188923_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188923_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188923_1	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0188923_2	PHROG	phrog_4973	NA	unknown function
UHGV-0188923_2	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0188923_2	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0188923_2	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0188923_2	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0188923_3	PHROG	phrog_7566	NA	unknown function
UHGV-0188923_3	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0188923_3	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0188923_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188923_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0188923_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0188923_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0188923_5	Pfam	PF05772	NinB protein	NinB
UHGV-0188923_5	Structural annotation	PF05772	NA	NA
UHGV-0188923_6	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0188923_6	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0188923_7	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0188923_7	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0188923_7	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0188923_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0188923_10	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0188923_11	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0188923_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0188923_11	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0188923_11	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0188923_11	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0188923_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0188923_11	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0188923_11	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0188923_13	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0188923_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188923_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188923_15	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0188923_15	eggNOG-mapper	537013.CLOSTMETH_03630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188923_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0188923_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188923_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0188923_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188923_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188923_16	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0188923_16	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188923_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188923_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0188923_16	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-0188923_17	PHROG	phrog_585	NA	unknown function
UHGV-0188923_17	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-0188923_17	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-0188923_17	Pfam	PF10711	NA	DUF2513
UHGV-0188923_17	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0188923_20	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0188923_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188923_20	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0188923_21	KOfam	K14059	int; integrase	NA
UHGV-0188923_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0188923_21	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0188923_21	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0188923_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0188923_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0188923_21	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0188923_22	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0188923_23	Structural annotation	PF12510	NA	NA
UHGV-0188923_24	PHROG	phrog_20016	NA	unknown function
UHGV-0188923_24	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0188923_24	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0188923_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0188923_25	PHROG	phrog_16490	NA	unknown function
UHGV-0188923_25	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0188923_26	PHROG	phrog_22984	NA	unknown function
UHGV-0188923_27	PHROG	phrog_21718	NA	unknown function
UHGV-0188923_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0188923_28	PHROG	phrog_3754	NA	unknown function
UHGV-0188923_28	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0188923_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0188923_30	PHROG	phrog_435	endolysin	lysis
UHGV-0188923_30	UniRef90	UniRef90_A0A351MWN4	SPOR domain-containing protein	NA
UHGV-0188923_30	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0188923_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0188923_30	Pfam	PF05036	SPOR domain	SPOR
UHGV-0188923_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0188923_30	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0188923_31	PHROG	phrog_881	holin	lysis
UHGV-0188923_31	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0188923_31	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0188923_31	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0188923_31	Structural annotation	PF16938	NA	NA
UHGV-0188923_32	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0188923_33	PHROG	phrog_4105	NA	unknown function
UHGV-0188923_33	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0188923_33	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0188923_34	PHROG	phrog_18593	NA	unknown function
UHGV-0188923_34	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0188923_34	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0188923_34	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0188923_34	Structural annotation	PF14600	NA	NA
UHGV-0188923_35	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-0188923_36	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0188923_36	Structural annotation	PF21722	NA	NA
UHGV-0188923_37	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0188923_37	UniRef90	UniRef90_A0A8D9PDI4	Collagen I alpha 1	NA
UHGV-0188923_37	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0188923_37	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0188923_38	PHROG	phrog_32744	NA	unknown function
UHGV-0188923_38	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0188923_39	PHROG	phrog_1194	NA	unknown function
UHGV-0188923_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0188923_40	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0188923_40	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0188923_40	COG	COG1511	NA	NA
UHGV-0188923_40	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0188923_42	PHROG	phrog_885	major tail protein	tail
UHGV-0188923_42	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0188923_42	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0188923_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0188923_43	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0188923_43	Structural annotation	PF11367	NA	NA
UHGV-0188923_44	PHROG	phrog_17977	NA	unknown function
UHGV-0188923_44	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0188923_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0188923_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0188923_46	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0188923_46	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0188923_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0188923_46	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188923_47	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0188923_47	Structural annotation	PF06810	NA	NA
UHGV-0188923_48	Structural annotation	PF18152	NA	NA
UHGV-0188923_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0188923_49	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0188923_49	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0188923_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0188923_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0188923_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0188923_50	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0188923_50	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0188923_50	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0188923_50	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0188923_50	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0188923_50	COG	COG2369	NA	NA
UHGV-0188923_50	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0188923_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0188923_51	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0188923_51	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0188923_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188923_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0188923_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188923_52	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188923_52	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0188923_52	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0188923_52	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188923_52	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188923_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188923_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188923_52	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188923_53	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0188923_53	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0188923_53	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0188923_53	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0188923_53	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0188923_53	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0188923_53	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0188923_54	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0188923_54	UniRef90	UniRef90_B0MAX6	Phage regulatory protein, Rha family	NA
UHGV-0188923_54	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0188923_54	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0188923_54	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0188923_54	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0188923_54	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0188923_56	Pfam	PF06906	NA	DUF1272
UHGV-0188923_56	COG	COG3813	NA	NA
UHGV-0188923_58	PHROG	phrog_18750	NA	unknown function
UHGV-0188923_58	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-0188923_58	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0188923_58	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0188923_61	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0188923_61	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0188923_61	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0188923_62	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0188923_62	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0188923_62	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0188923_62	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0188923_62	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0188923_62	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0188923_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0188923_62	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0188923_64	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0188923_64	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0188923_64	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0188923_64	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0188923_65	Structural annotation	PF11417	NA	NA