UHGV-0188980

Genome information

Genome length 25,399 bps

CDS count 34

Completeness 65.50% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188980
vOTU ID	vOTU-029812
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597544
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.56
Jumbo phage	No

Genome content
Genome length	25,399 bps
GC content	58.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.14%
Average CDS length	676.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188980_1	KOfam	K14059	int; integrase	NA
UHGV-0188980_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0188980_1	UniRef90	UniRef90_A0A3E2U452	Site-specific integrase	NA
UHGV-0188980_1	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-0188980_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0188980_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0188980_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0188980_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0188980_2	PHROG	phrog_3291	NA	unknown function
UHGV-0188980_2	eggNOG-mapper	457570.Nther_0820	NA	NA
UHGV-0188980_3	PHROG	phrog_1758	acetyltransferase	other
UHGV-0188980_3	UniRef90	UniRef90_A0A3E2U453	N-acetyltransferase	NA
UHGV-0188980_3	eggNOG-mapper	272563.CD630_29260	acetyltransferase	NA
UHGV-0188980_3	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0188980_3	Structural annotation	PF17013, MF_03130, NF000482, COG3981	NA	NA
UHGV-0188980_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0188980_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188980_4	UniRef90	UniRef90_A0A564U026	HTH-type transcriptional regulator ImmR	NA
UHGV-0188980_4	eggNOG-mapper	1123304.AQYA01000037_gene181	Peptidase S24-like	NA
UHGV-0188980_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188980_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0188980_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0188980_6	UniRef90	UniRef90_UPI001CBF786B	helix-turn-helix domain-containing protein	NA
UHGV-0188980_6	eggNOG-mapper	718252.FP2_04820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0188980_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0188980_6	Structural annotation	PF13443, MF_00535, NF007257, COG1396	NA	NA
UHGV-0188980_7	UniRef90	UniRef90_UPI001CBE80FB	helix-turn-helix transcriptional regulator	NA
UHGV-0188980_7	eggNOG-mapper	1160721.RBI_I01602	NA	NA
UHGV-0188980_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0188980_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0188980_10	eggNOG-mapper	411467.BACCAP_04626	NA	NA
UHGV-0188980_11	PHROG	phrog_3777	NA	unknown function
UHGV-0188980_11	UniRef90	UniRef90_UPI00130E0E41	NA	NA
UHGV-0188980_11	Pfam	PF12957	NA	DUF3846
UHGV-0188980_11	Structural annotation	PF12957	NA	NA
UHGV-0188980_12	UniRef90	UniRef90_A0A3E2U472	DNA-binding protein	NA
UHGV-0188980_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0188980_12	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0188980_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0188980_17	PHROG	phrog_24484	NA	unknown function
UHGV-0188980_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0188980_19	eggNOG-mapper	525255.HMPREF0077_0972	NA	NA
UHGV-0188980_19	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0188980_20	UniRef90	UniRef90_A0A844DP33	SqdX protein	NA
UHGV-0188980_20	Pfam	PF07374	NA	DUF1492
UHGV-0188980_20	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0188980_21	UniRef90	UniRef90_UPI00195E9406	transposase	NA
UHGV-0188980_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188980_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0188980_22	UniRef90	UniRef90_A0A329UJ95	Terminase-like family protein	NA
UHGV-0188980_22	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0188980_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0188980_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188980_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0188980_23	PHROG	phrog_156	portal protein	head and packaging
UHGV-0188980_23	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0188980_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0188980_24	KOfam	K07584	NA	NA
UHGV-0188980_24	PHROG	phrog_13908	NA	unknown function
UHGV-0188980_24	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0188980_24	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0188980_24	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0188980_24	COG	COG2868	NA	NA
UHGV-0188980_24	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0188980_25	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0188980_25	UniRef90	UniRef90_A0A844DTU7	N4-gp56 family major capsid protein	NA
UHGV-0188980_25	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0188980_25	Pfam	PF13252	NA	DUF4043
UHGV-0188980_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0188980_25	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0188980_26	PHROG	phrog_15239	NA	unknown function
UHGV-0188980_27	PHROG	phrog_12105	NA	unknown function
UHGV-0188980_28	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0188980_28	eggNOG-mapper	748224.HMPREF9436_01402	NA	NA
UHGV-0188980_28	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0188980_29	UniRef90	UniRef90_A0A329TFM2	Rho-GAP domain-containing protein	NA
UHGV-0188980_30	eggNOG-mapper	748224.HMPREF9436_01404	lysozyme activity	NA
UHGV-0188980_30	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0188980_31	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0188980_31	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0188980_31	UniRef90	UniRef90_A0A329TU28	HicB family protein	NA
UHGV-0188980_31	eggNOG-mapper	718252.FP2_04880	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0188980_31	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0188980_31	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0188980_31	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0188980_32	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0188980_32	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0188980_32	UniRef90	UniRef90_A0A3E2U499	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0188980_32	eggNOG-mapper	888060.HMPREF9081_1543	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0188980_32	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0188980_32	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0188980_32	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0188980_33	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0188980_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0188980_33	Structural annotation	MF_02066	NA	NA
UHGV-0188980_34	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA