UHGV-0188983

Genome information

Genome length 25,952 bps

CDS count 37

Completeness 61.84% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188983
vOTU ID	vOTU-029814
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597547
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.29
Jumbo phage	No

Genome content
Genome length	25,952 bps
GC content	53.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.69%
Average CDS length	653.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188983_1	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0188983_1	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0188983_1	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0188983_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0188983_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0188983_1	Pfam	PF14386	NA	DUF4417
UHGV-0188983_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0188983_1	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0188983_3	PHROG	phrog_9479	NA	unknown function
UHGV-0188983_3	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0188983_3	Structural annotation	PF15529	NA	NA
UHGV-0188983_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188983_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188983_4	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0188983_4	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0188983_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188983_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188983_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188983_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188983_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188983_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188983_5	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0188983_5	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0188983_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188983_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188983_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188983_6	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0188983_6	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0188983_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188983_6	COG	COG2369	NA	NA
UHGV-0188983_6	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0188983_7	eggNOG-mapper	1514668.JOOA01000001_gene690	NA	NA
UHGV-0188983_8	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0188983_8	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0188983_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188983_9	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0188983_9	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0188983_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188983_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188983_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188983_9	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188983_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188983_10	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0188983_11	PHROG	phrog_3366	NA	unknown function
UHGV-0188983_11	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0188983_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0188983_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188983_12	UniRef90	UniRef90_A0A1C5N8K8	Minor capsid protein	NA
UHGV-0188983_12	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0188983_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188983_12	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0188983_13	PHROG	phrog_3266	tail completion	connector
UHGV-0188983_13	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0188983_13	Structural annotation	PF12691	NA	NA
UHGV-0188983_14	PHROG	phrog_3099	NA	unknown function
UHGV-0188983_14	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0188983_14	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0188983_15	PHROG	phrog_11299	NA	unknown function
UHGV-0188983_15	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0188983_15	Structural annotation	PF10666	NA	NA
UHGV-0188983_16	PHROG	phrog_706	NA	unknown function
UHGV-0188983_16	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0188983_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0188983_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188983_16	Structural annotation	PF06854	NA	NA
UHGV-0188983_17	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0188983_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0188983_17	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0188983_17	COG	COG1511	NA	NA
UHGV-0188983_18	PHROG	phrog_1194	NA	unknown function
UHGV-0188983_18	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0188983_19	PHROG	phrog_6616	tail protein	tail
UHGV-0188983_19	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0188983_19	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0188983_19	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0188983_20	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0188983_20	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0188983_21	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0188983_21	Structural annotation	PF07238	NA	NA
UHGV-0188983_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0188983_25	PHROG	phrog_291	endolysin	lysis
UHGV-0188983_25	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-0188983_25	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0188983_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0188983_25	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0188983_25	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0188983_25	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0188983_26	PHROG	phrog_37604	NA	unknown function
UHGV-0188983_26	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0188983_27	PHROG	phrog_1129	holin	lysis
UHGV-0188983_27	UniRef90	UniRef90_A0A3R8INC9	Enolase	NA
UHGV-0188983_27	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0188983_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0188983_27	Structural annotation	PF06946	NA	NA
UHGV-0188983_30	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0188983_32	PHROG	phrog_16490	NA	unknown function
UHGV-0188983_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0188983_33	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0188983_34	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0188983_35	Pfam	PF08681	NA	DUF1778