UHGV-0188998

Genome information

Genome length 40,595 bps

CDS count 74

Completeness 96.40% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0188998
vOTU ID	vOTU-066355
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595969
BioSample	SAMN09781778
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.33
Jumbo phage	No

Genome content
Genome length	40,595 bps
GC content	52.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	90.93%
Average CDS length	503.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0188998_1	PHROG	phrog_18306	NA	unknown function
UHGV-0188998_1	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0188998_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0188998_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0188998_2	UniRef90	UniRef90_A0A3A9ED12	ATP-binding protein	NA
UHGV-0188998_2	eggNOG-mapper	1121333.JMLH01000056_gene1758	IstB-like ATP binding protein	NA
UHGV-0188998_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0188998_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0188998_2	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0188998_3	PHROG	phrog_15768	NA	unknown function
UHGV-0188998_3	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0188998_3	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0188998_3	AcrCatalog	cluster_38323	NA	NA
UHGV-0188998_3	Pfam	PF19808	NA	DUF6291
UHGV-0188998_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0188998_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0188998_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0188998_4	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0188998_4	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0188998_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0188998_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0188998_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0188998_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0188998_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0188998_5	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188998_5	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0188998_5	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0188998_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0188998_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0188998_6	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0188998_6	Structural annotation	PF05772	NA	NA
UHGV-0188998_7	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0188998_7	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0188998_7	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0188998_7	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0188998_11	PHROG	phrog_5781	NA	unknown function
UHGV-0188998_11	UniRef90	UniRef90_A0A3E2T6B6	NA	NA
UHGV-0188998_11	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0188998_11	Pfam	PF14359	NA	DUF4406
UHGV-0188998_11	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0188998_11	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0188998_16	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0188998_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188998_16	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0188998_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0188998_17	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0188998_17	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-0188998_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0188998_17	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0188998_17	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0188998_19	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-0188998_19	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-0188998_20	eggNOG-mapper	1382304.JNIL01000001_gene3508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0188998_20	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0188998_20	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0188998_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0188998_21	PHROG	phrog_95	integrase	integration and excision
UHGV-0188998_21	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0188998_21	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-0188998_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0188998_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0188998_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0188998_21	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0188998_22	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0188998_22	UniRef90	UniRef90_A0A7G9B1Q1	NA	NA
UHGV-0188998_22	eggNOG-mapper	97139.C824_00155	NA	NA
UHGV-0188998_22	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0188998_22	Pfam	PF18818	Zincin-like metallopeptidase	MPTase-PolyVal
UHGV-0188998_22	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0188998_22	Structural annotation	PF18818, PF08401, COG4227	NA	NA
UHGV-0188998_25	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0188998_25	Pfam	PF08681	NA	DUF1778
UHGV-0188998_25	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0188998_27	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0188998_28	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0188998_29	PHROG	phrog_16490	NA	unknown function
UHGV-0188998_29	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0188998_31	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0188998_32	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0188998_33	PHROG	phrog_608	holin	lysis
UHGV-0188998_33	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0188998_33	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0188998_33	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0188998_33	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0188998_34	PHROG	phrog_37604	NA	unknown function
UHGV-0188998_34	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0188998_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0188998_35	PHROG	phrog_291	endolysin	lysis
UHGV-0188998_35	UniRef90	UniRef90_R6SK78	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0188998_35	eggNOG-mapper	1125712.HMPREF1316_2132	CW_7 repeat	NA
UHGV-0188998_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0188998_35	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0188998_35	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0188998_35	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0188998_39	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0188998_39	Structural annotation	PF07238	NA	NA
UHGV-0188998_40	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0188998_40	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0188998_41	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0188998_41	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0188998_41	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0188998_42	PHROG	phrog_1194	NA	unknown function
UHGV-0188998_42	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0188998_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0188998_43	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0188998_43	COG	COG1511	NA	NA
UHGV-0188998_43	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0188998_44	PHROG	phrog_706	NA	unknown function
UHGV-0188998_44	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0188998_44	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0188998_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0188998_44	Structural annotation	PF06854	NA	NA
UHGV-0188998_45	PHROG	phrog_11299	NA	unknown function
UHGV-0188998_45	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0188998_45	Structural annotation	PF10666	NA	NA
UHGV-0188998_46	PHROG	phrog_3099	NA	unknown function
UHGV-0188998_46	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0188998_46	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0188998_47	PHROG	phrog_3266	tail completion	connector
UHGV-0188998_47	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0188998_47	Structural annotation	PF12691	NA	NA
UHGV-0188998_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0188998_48	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0188998_48	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0188998_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0188998_48	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0188998_49	PHROG	phrog_3366	NA	unknown function
UHGV-0188998_49	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0188998_49	Pfam	PF20536	NA	DUF6751
UHGV-0188998_49	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0188998_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0188998_50	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0188998_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0188998_51	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0188998_51	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0188998_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0188998_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0188998_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0188998_51	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0188998_52	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0188998_52	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0188998_53	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0188998_53	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0188998_53	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0188998_53	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0188998_53	COG	COG2369	NA	NA
UHGV-0188998_53	Structural annotation	PF06152	NA	NA
UHGV-0188998_54	PHROG	phrog_533	portal protein	head and packaging
UHGV-0188998_54	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0188998_54	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0188998_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0188998_54	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0188998_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0188998_55	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0188998_55	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0188998_55	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0188998_55	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0188998_55	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0188998_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0188998_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0188998_55	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0188998_57	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0188998_57	PHROG	phrog_9677	NA	unknown function
UHGV-0188998_57	UniRef90	UniRef90_A0A378NUT7	UDP-galactopyranose mutase	NA
UHGV-0188998_57	eggNOG-mapper	546270.GEMHA0001_1123	UDP-galactopyranose mutase	NA
UHGV-0188998_57	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0188998_57	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0188998_57	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0188998_57	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0188998_57	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0188998_58	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0188998_58	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0188998_58	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0188998_58	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0188998_58	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0188998_59	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0188998_59	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0188998_59	UniRef90	UniRef90_A0A1C5ZCG7	ParB/RepB/Spo0J family partition protein	NA
UHGV-0188998_59	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0188998_59	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0188998_59	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0188998_59	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0188998_59	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0188998_61	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0188998_61	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0188998_61	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0188998_62	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0188998_62	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0188998_71	PHROG	phrog_22543	NA	unknown function
UHGV-0188998_71	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0188998_72	Pfam	PF04448	NA	DUF551
UHGV-0188998_72	Structural annotation	PF04448, NF041588	NA	NA