UHGV-0189026

Genome information

Genome length 36,875 bps

CDS count 48

Completeness 96.22% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189026
vOTU ID	vOTU-074150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597163
BioSample	SAMN09781764
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62
Jumbo phage	No

Genome content
Genome length	36,875 bps
GC content	50.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.32%
Average CDS length	706.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189026_1	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0189026_1	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-0189026_1	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0189026_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0189026_1	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-0189026_2	PHROG	phrog_608	holin	lysis
UHGV-0189026_2	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0189026_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0189026_2	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0189026_3	PHROG	phrog_1863	NA	unknown function
UHGV-0189026_3	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0189026_6	Structural annotation	PF02973	NA	NA
UHGV-0189026_7	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0189026_9	PHROG	phrog_6616	tail protein	tail
UHGV-0189026_9	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0189026_9	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0189026_9	COG	COG4926	Phage-related protein	NA
UHGV-0189026_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0189026_10	PHROG	phrog_1194	NA	unknown function
UHGV-0189026_10	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0189026_10	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0189026_10	Pfam	PF20458	NA	DUF6711
UHGV-0189026_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0189026_11	PHROG	phrog_23726	NA	unknown function
UHGV-0189026_11	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-0189026_11	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0189026_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0189026_12	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0189026_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189026_13	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0189026_13	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0189026_13	Structural annotation	PF19591	NA	NA
UHGV-0189026_14	PHROG	phrog_158	major tail protein	tail
UHGV-0189026_14	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0189026_14	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0189026_14	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0189026_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0189026_15	Structural annotation	PF05657	NA	NA
UHGV-0189026_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0189026_16	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0189026_16	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0189026_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0189026_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0189026_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0189026_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0189026_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0189026_18	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0189026_18	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0189026_19	PHROG	phrog_283	major head protein	head and packaging
UHGV-0189026_19	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0189026_19	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0189026_19	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0189026_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0189026_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0189026_20	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0189026_20	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0189026_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0189026_20	Structural annotation	PF06810	NA	NA
UHGV-0189026_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0189026_22	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-0189026_22	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0189026_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0189026_22	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0189026_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0189026_22	COG	COG2369	NA	NA
UHGV-0189026_22	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0189026_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0189026_23	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0189026_23	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189026_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189026_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0189026_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189026_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0189026_24	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0189026_24	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0189026_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0189026_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0189026_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189026_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189026_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0189026_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0189026_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0189026_25	UniRef90	UniRef90_D4CPK6	Terminase small subunit	NA
UHGV-0189026_25	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0189026_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0189026_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0189026_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0189026_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0189026_27	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0189026_27	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0189026_27	Structural annotation	PF04545	NA	NA
UHGV-0189026_28	PHROG	phrog_3777	NA	unknown function
UHGV-0189026_28	UniRef90	UniRef90_A0A417F5N7	NA	NA
UHGV-0189026_28	eggNOG-mapper	1235797.C816_03984	NA	NA
UHGV-0189026_28	Pfam	PF12957	NA	DUF3846
UHGV-0189026_28	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0189026_28	Structural annotation	PF12957	NA	NA
UHGV-0189026_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0189026_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0189026_29	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0189026_29	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-0189026_29	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0189026_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0189026_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0189026_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0189026_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189026_30	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0189026_30	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-0189026_30	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0189026_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0189026_32	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-0189026_32	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0189026_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0189026_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0189026_32	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0189026_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0189026_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0189026_33	UniRef90	UniRef90_A0A7X5INW3	POLAc domain-containing protein	NA
UHGV-0189026_33	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0189026_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0189026_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0189026_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0189026_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189026_34	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-0189026_34	eggNOG-mapper	1408437.JNJN01000081_gene1517	NA	NA
UHGV-0189026_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0189026_34	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0189026_36	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0189026_36	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189026_36	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-0189026_36	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-0189026_36	Pfam	PF10926	NA	DUF2800
UHGV-0189026_36	COG	COG2887	RecB family exonuclease	NA
UHGV-0189026_36	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0189026_38	PHROG	phrog_22695	NA	unknown function
UHGV-0189026_38	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-0189026_40	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0189026_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189026_40	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0189026_40	eggNOG-mapper	226185.EF_1422	Helix-turn-helix XRE-family like proteins	NA
UHGV-0189026_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189026_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0189026_40	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0189026_42	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0189026_42	PHROG	phrog_18750	NA	unknown function
UHGV-0189026_42	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0189026_42	eggNOG-mapper	1519439.JPJG01000051_gene725	Cell wall hydrolase	NA
UHGV-0189026_42	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0189026_42	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0189026_42	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0189026_44	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0189026_44	UniRef90	UniRef90_A0A5B6P9C0	XRE family transcriptional regulator	NA
UHGV-0189026_44	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-0189026_44	Structural annotation	TIGR03070	NA	NA
UHGV-0189026_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0189026_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0189026_45	UniRef90	UniRef90_A0A7X5E0L6	XRE family transcriptional regulator	NA
UHGV-0189026_45	eggNOG-mapper	938278.CAJO01000051_gene819	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0189026_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189026_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0189026_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0189026_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF007257, COG1974, COG1396	NA	NA
UHGV-0189026_46	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0189026_46	UniRef90	UniRef90_A0A7C6HED8	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0189026_46	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0189026_46	Pfam	PF05534	HicB family	HicB
UHGV-0189026_46	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0189026_46	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-0189026_48	KOfam	K14059	int; integrase	NA
UHGV-0189026_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0189026_48	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0189026_48	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0189026_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189026_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0189026_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA