UHGV-0189073

Genome information

Genome length 40,583 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189073
vOTU ID	vOTU-047056
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596247
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.19
Jumbo phage	No

Genome content
Genome length	40,583 bps
GC content	53.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.53%
Average CDS length	720.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189073_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0189073_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0189073_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0189073_2	UniRef90	UniRef90_A0A645A9U3	PG_binding_1 domain-containing protein	NA
UHGV-0189073_2	eggNOG-mapper	272558.10176295	NlpC/P60 family	NA
UHGV-0189073_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0189073_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0189073_3	PHROG	phrog_372	tail protein	tail
UHGV-0189073_3	UniRef90	UniRef90_UPI001E5C78A4	NA	NA
UHGV-0189073_3	eggNOG-mapper	877414.ATWA01000019_gene2053	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0189073_3	Pfam	PF05895	NA	DUF859
UHGV-0189073_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0189073_4	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-0189073_4	Structural annotation	NF038340	NA	NA
UHGV-0189073_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0189073_5	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0189073_5	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0189073_6	PHROG	phrog_12105	NA	unknown function
UHGV-0189073_7	PHROG	phrog_15239	NA	unknown function
UHGV-0189073_8	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0189073_8	UniRef90	UniRef90_A0A1I0BH03	Major capsid protein, N4-gp56 family	NA
UHGV-0189073_8	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-0189073_8	Pfam	PF13252	NA	DUF4043
UHGV-0189073_8	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0189073_8	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0189073_9	PHROG	phrog_13908	NA	unknown function
UHGV-0189073_9	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0189073_10	PHROG	phrog_4478	peptidase	other
UHGV-0189073_10	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0189073_10	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0189073_11	PHROG	phrog_156	portal protein	head and packaging
UHGV-0189073_11	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0189073_11	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0189073_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189073_12	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0189073_12	UniRef90	UniRef90_UPI001EE1BE37	phage terminase large subunit	NA
UHGV-0189073_12	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-0189073_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0189073_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189073_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0189073_15	Structural annotation	COG4451	NA	NA
UHGV-0189073_16	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0189073_16	eggNOG-mapper	1410630.JNKP01000001_gene2069	sequence-specific DNA binding	NA
UHGV-0189073_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189073_16	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0189073_16	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0189073_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0189073_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189073_17	UniRef90	UniRef90_UPI001D067827	single-stranded DNA-binding protein	NA
UHGV-0189073_17	eggNOG-mapper	218495.SUB0136	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0189073_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0189073_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0189073_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189073_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0189073_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0189073_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189073_18	UniRef90	UniRef90_A0A843GYT1	NA	NA
UHGV-0189073_18	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0189073_18	Pfam	PF06356	NA	DUF1064
UHGV-0189073_18	Structural annotation	PF06356	NA	NA
UHGV-0189073_19	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189073_19	UniRef90	UniRef90_A0A413DGU9	NA	NA
UHGV-0189073_19	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-0189073_19	Pfam	PF12961	NA	DUF3850
UHGV-0189073_19	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0189073_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0189073_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0189073_24	UniRef90	UniRef90_A0A6H1ZVA0	Putative methyltransferase	NA
UHGV-0189073_24	eggNOG-mapper	596323.HMPREF0554_0840	ParB-like nuclease domain	NA
UHGV-0189073_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0189073_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0189073_24	COG	COG0863	DNA modification methylase	NA
UHGV-0189073_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0189073_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0189073_26	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0189073_26	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0189073_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0189073_26	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0189073_28	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189073_28	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0189073_28	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0189073_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0189073_30	PHROG	phrog_2113	NA	unknown function
UHGV-0189073_30	Structural annotation	PF08220, TIGR00122, COG1654	NA	NA
UHGV-0189073_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0189073_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189073_31	UniRef90	UniRef90_A0A2N6DJK3	Recombinase	NA
UHGV-0189073_31	eggNOG-mapper	857293.CAAU_0781	RecT family	NA
UHGV-0189073_31	Pfam	PF03837	RecT family	RecT
UHGV-0189073_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0189073_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0189073_31	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0189073_32	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189073_32	UniRef90	UniRef90_A0A7X6XAG1	Endonuclease	NA
UHGV-0189073_32	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0189073_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0189073_32	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0189073_32	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0189073_32	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0189073_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189073_35	UniRef90	UniRef90_A0A0V8C4S1	Transcriptional regulator Cro/CI family	NA
UHGV-0189073_35	eggNOG-mapper	1123302.KB904185_gene810	Helix-turn-helix domain	NA
UHGV-0189073_35	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0189073_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189073_35	Structural annotation	PF00717, PF12844, MF_00015, NF041951, COG1396	NA	NA
UHGV-0189073_37	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0189073_37	eggNOG-mapper	411461.DORFOR_02407	Putative restriction endonuclease	NA
UHGV-0189073_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189073_37	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0189073_37	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0189073_39	KOfam	K14059	int; integrase	NA
UHGV-0189073_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0189073_39	UniRef90	UniRef90_A0A316QG14	Tyr recombinase domain-containing protein	NA
UHGV-0189073_39	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0189073_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189073_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189073_39	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0189073_41	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0189073_42	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0189073_43	PHROG	phrog_16490	NA	unknown function
UHGV-0189073_43	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0189073_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0189073_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0189073_46	UniRef90	UniRef90_A0A6L6TNB8	Bro-N domain-containing protein	NA
UHGV-0189073_46	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0189073_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0189073_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0189073_46	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0189073_47	UniRef90	UniRef90_A0A413G573	CopG family transcriptional regulator	NA
UHGV-0189073_47	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0189073_47	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0189073_47	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0189073_50	UniRef90	UniRef90_A0A7X7WBI0	NlpC/P60 domain-containing protein	NA
UHGV-0189073_50	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0189073_50	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0189073_50	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0189073_51	PHROG	phrog_1129	holin	lysis
UHGV-0189073_51	UniRef90	UniRef90_A0A316QDA6	Enolase	NA
UHGV-0189073_51	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0189073_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0189073_51	Structural annotation	PF06946	NA	NA
UHGV-0189073_52	PHROG	phrog_4105	NA	unknown function
UHGV-0189073_53	PHROG	phrog_22978	NA	unknown function
UHGV-0189073_53	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0189073_53	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal