UHGV-0189167

Genome information

Genome length 39,436 bps

CDS count 68

Completeness 93.28% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189167
vOTU ID	vOTU-067623
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594537
BioSample	SAMN09781772
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.25
Jumbo phage	No

Genome content
Genome length	39,436 bps
GC content	54.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.85%
Average CDS length	530.91 bps
tRNA count	3
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189167_1	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0189167_1	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189167_1	eggNOG-mapper	563038.HMPREF0851_01045	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0189167_1	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0189167_1	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0189167_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0189167_2	Structural annotation	PF11417	NA	NA
UHGV-0189167_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0189167_5	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0189167_5	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0189167_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0189167_6	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0189167_6	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0189167_6	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0189167_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0189167_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0189167_9	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189167_9	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0189167_9	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0189167_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0189167_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0189167_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0189167_10	PHROG	phrog_2715	NA	unknown function
UHGV-0189167_10	eggNOG-mapper	718252.FP2_16370	NA	NA
UHGV-0189167_10	Structural annotation	PF18406	NA	NA
UHGV-0189167_11	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0189167_11	Structural annotation	PF07374	NA	NA
UHGV-0189167_12	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0189167_12	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0189167_12	Structural annotation	PF04218	NA	NA
UHGV-0189167_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189167_13	PHROG	phrog_10250	NA	unknown function
UHGV-0189167_13	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0189167_13	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0189167_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0189167_13	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0189167_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189167_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189167_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0189167_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0189167_14	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0189167_14	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189167_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189167_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0189167_15	Pfam	PF04448	NA	DUF551
UHGV-0189167_16	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0189167_16	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0189167_16	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0189167_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0189167_16	COG	COG2369	NA	NA
UHGV-0189167_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0189167_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0189167_19	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0189167_19	eggNOG-mapper	268407.PWYN_03010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0189167_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0189167_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0189167_21	Structural annotation	PF06810	NA	NA
UHGV-0189167_22	PHROG	phrog_544	major head protein	head and packaging
UHGV-0189167_22	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0189167_22	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0189167_22	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0189167_24	PHROG	phrog_17977	NA	unknown function
UHGV-0189167_24	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0189167_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0189167_25	Structural annotation	PF13554	NA	NA
UHGV-0189167_26	PHROG	phrog_885	major tail protein	tail
UHGV-0189167_26	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0189167_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0189167_29	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0189167_29	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0189167_29	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0189167_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0189167_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0189167_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189167_29	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0189167_30	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0189167_30	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0189167_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0189167_30	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0189167_31	PHROG	phrog_3558	tail protein	tail
UHGV-0189167_31	UniRef90	UniRef90_R9C6X0	Phage minor structural protein	NA
UHGV-0189167_31	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0189167_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0189167_31	COG	COG4926	Phage-related protein	NA
UHGV-0189167_31	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0189167_32	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0189167_34	PHROG	phrog_1382	NA	unknown function
UHGV-0189167_34	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0189167_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0189167_35	PHROG	phrog_291	endolysin	lysis
UHGV-0189167_35	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0189167_35	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0189167_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0189167_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0189167_35	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0189167_37	PHROG	phrog_15303	NA	unknown function
UHGV-0189167_37	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0189167_38	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0189167_38	Structural annotation	PF10651	NA	NA
UHGV-0189167_43	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0189167_43	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0189167_45	PHROG	phrog_3754	NA	unknown function
UHGV-0189167_45	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0189167_46	PHROG	phrog_21718	NA	unknown function
UHGV-0189167_46	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0189167_47	PHROG	phrog_22984	NA	unknown function
UHGV-0189167_48	PHROG	phrog_16490	NA	unknown function
UHGV-0189167_48	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0189167_50	PHROG	phrog_20016	NA	unknown function
UHGV-0189167_50	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0189167_50	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0189167_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0189167_51	Structural annotation	PF12510	NA	NA
UHGV-0189167_53	KOfam	K14059	int; integrase	NA
UHGV-0189167_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0189167_53	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0189167_53	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0189167_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189167_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0189167_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0189167_54	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0189167_54	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0189167_54	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0189167_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189167_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189167_54	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0189167_57	UniRef90	UniRef90_A0A1W2B3I7	Ig-like domain (Group 2)	NA
UHGV-0189167_57	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0189167_57	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0189167_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0189167_60	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0189167_60	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0189167_60	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0189167_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189167_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189167_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0189167_63	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0189167_63	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0189167_63	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0189167_63	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0189167_63	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0189167_63	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0189167_63	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0189167_64	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0189167_64	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0189167_65	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0189167_65	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0189167_68	PHROG	phrog_4433	NA	unknown function
UHGV-0189167_68	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0189167_68	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0189167_68	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0189167_68	Structural annotation	NF000318	NA	NA