UHGV-0189384

Genome information

Genome length 37,351 bps

CDS count 55

Completeness 97.92% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189384
vOTU ID	vOTU-011258
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595595
BioSample	SAMN09781771
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	39
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	101.62
Jumbo phage	No

Genome content
Genome length	37,351 bps
GC content	38.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	95.71%
Average CDS length	653.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189384_2	PHROG	phrog_998	endolysin	lysis
UHGV-0189384_2	UniRef90	UniRef90_A0A1C3SR85	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0189384_2	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0189384_2	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0189384_2	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-0189384_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0189384_2	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-0189384_3	PHROG	phrog_608	holin	lysis
UHGV-0189384_3	UniRef90	UniRef90_S5R5H3	Holin	NA
UHGV-0189384_3	eggNOG-mapper	1000588.HMPREF9965_1685	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0189384_3	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0189384_3	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0189384_3	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0189384_4	PHROG	phrog_18008	NA	unknown function
UHGV-0189384_5	PHROG	phrog_1567	NA	unknown function
UHGV-0189384_5	UniRef90	UniRef90_A0A139RNG9	NA	NA
UHGV-0189384_6	PHROG	phrog_1060	NA	unknown function
UHGV-0189384_6	UniRef90	UniRef90_UPI000E4E0941	NA	NA
UHGV-0189384_6	eggNOG-mapper	1321820.HMPREF1983_00919	NA	NA
UHGV-0189384_6	Pfam	PF07104	NA	DUF1366
UHGV-0189384_6	Structural annotation	PF07104	NA	NA
UHGV-0189384_7	PHROG	phrog_372	tail protein	tail
UHGV-0189384_7	UniRef90	UniRef90_UPI001BD9A82A	NA	NA
UHGV-0189384_7	eggNOG-mapper	888049.HMPREF8578_0253	NA	NA
UHGV-0189384_7	Pfam	PF05895	NA	DUF859
UHGV-0189384_7	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0189384_8	PHROG	phrog_10693	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0189384_8	UniRef90	UniRef90_A0A4D6AXX8	Tail assembly protein	NA
UHGV-0189384_8	eggNOG-mapper	112023.Q9MCJ6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0189384_9	Structural annotation	PF16857	NA	NA
UHGV-0189384_10	PHROG	phrog_3267	tail protein	tail
UHGV-0189384_10	UniRef90	UniRef90_S5QY57	Prophage pi3 protein 11	NA
UHGV-0189384_10	eggNOG-mapper	112023.Q9MCJ7_9CAUD	NA	NA
UHGV-0189384_10	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0189384_11	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0189384_11	UniRef90	UniRef90_A0A4D6AYF3	Tail assembly protein	NA
UHGV-0189384_11	eggNOG-mapper	1239381.K4JXJ8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0189384_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0189384_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0189384_11	Structural annotation	PF14594, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0189384_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0189384_12	UniRef90	UniRef90_A0A135YRT4	Phage tail component protein	NA
UHGV-0189384_12	eggNOG-mapper	1277892.M1I9T9_9CAUD	Phage tail protein	NA
UHGV-0189384_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0189384_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0189384_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0189384_13	PHROG	phrog_1204	tail protein	tail
UHGV-0189384_13	UniRef90	UniRef90_UPI001BD9E286	tape measure protein	NA
UHGV-0189384_13	eggNOG-mapper	1277892.M1HNU8_9CAUD	NA	NA
UHGV-0189384_13	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0189384_14	PHROG	phrog_706	NA	unknown function
UHGV-0189384_14	UniRef90	UniRef90_S5RJ45	NA	NA
UHGV-0189384_14	eggNOG-mapper	1123302.KB904167_gene526	Bacteriophage Gp15 protein	NA
UHGV-0189384_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0189384_14	Structural annotation	PF06854	NA	NA
UHGV-0189384_15	PHROG	phrog_1061	NA	unknown function
UHGV-0189384_15	Structural annotation	PF10666	NA	NA
UHGV-0189384_16	PHROG	phrog_820	major tail protein	tail
UHGV-0189384_16	UniRef90	UniRef90_S5RM31	Tail shaft protein	NA
UHGV-0189384_16	eggNOG-mapper	1123302.KB904167_gene524	NA	NA
UHGV-0189384_16	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0189384_17	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0189384_17	UniRef90	UniRef90_A0A1I7JHB1	Bacteriophage minor capsid protein	NA
UHGV-0189384_17	eggNOG-mapper	1123302.KB904167_gene523	Minor capsid protein from bacteriophage	NA
UHGV-0189384_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0189384_17	Structural annotation	PF12691	NA	NA
UHGV-0189384_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0189384_18	UniRef90	UniRef90_A0A091BPX5	Capsid protein	NA
UHGV-0189384_18	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-0189384_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0189384_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0189384_19	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0189384_19	UniRef90	UniRef90_A0A139MVB4	Phage minor capsid protein	NA
UHGV-0189384_19	eggNOG-mapper	1123302.KB904167_gene521	Minor capsid protein	NA
UHGV-0189384_19	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0189384_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0189384_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0189384_20	UniRef90	UniRef90_S5QY64	NA	NA
UHGV-0189384_20	eggNOG-mapper	1123302.KB904167_gene520	NA	NA
UHGV-0189384_21	PHROG	phrog_2910	NA	unknown function
UHGV-0189384_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0189384_23	UniRef90	UniRef90_A0A4D6ASP8	Main capsid protein	NA
UHGV-0189384_23	eggNOG-mapper	537874.B3GW03_9CAUD	NA	NA
UHGV-0189384_23	Structural annotation	PF20911	NA	NA
UHGV-0189384_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0189384_24	UniRef90	UniRef90_A0A091C9U0	Scaffold protein	NA
UHGV-0189384_24	eggNOG-mapper	1239381.K4K7P1_9CAUD	Phage minor structural protein GP20	NA
UHGV-0189384_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0189384_24	Structural annotation	PF06810	NA	NA
UHGV-0189384_25	PHROG	phrog_7261	NA	unknown function
UHGV-0189384_25	UniRef90	UniRef90_S5QY68	NA	NA
UHGV-0189384_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0189384_26	UniRef90	UniRef90_S5RM41	Phage minor capsid protein 2	NA
UHGV-0189384_26	eggNOG-mapper	1123302.KB904167_gene516	Phage minor capsid protein 2	NA
UHGV-0189384_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0189384_26	Structural annotation	PF06152	NA	NA
UHGV-0189384_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0189384_27	UniRef90	UniRef90_S5R0Z1	Phage minor capsid protein	NA
UHGV-0189384_27	eggNOG-mapper	1239381.K4JTJ5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189384_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189384_27	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0189384_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0189384_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189384_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0189384_28	UniRef90	UniRef90_A0A135YR91	Phage terminase, large subunit, PBSX family	NA
UHGV-0189384_28	eggNOG-mapper	1123302.KB904167_gene514	Phage terminase, large subunit	NA
UHGV-0189384_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0189384_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0189384_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189384_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189384_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0189384_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0189384_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0189384_29	UniRef90	UniRef90_A0A091BPX2	Terminase	NA
UHGV-0189384_29	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0189384_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0189384_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0189384_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0189384_30	PHROG	phrog_3511	NA	unknown function
UHGV-0189384_30	UniRef90	UniRef90_A0A139N2N4	NA	NA
UHGV-0189384_30	Structural annotation	TIGR01636	NA	NA
UHGV-0189384_31	PHROG	phrog_29344	NA	unknown function
UHGV-0189384_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0189384_33	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189384_33	UniRef90	UniRef90_A0A1H9VA32	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0189384_33	eggNOG-mapper	1277892.M1IEV8_9CAUD	magnesium ion binding	NA
UHGV-0189384_34	PHROG	phrog_121	NA	unknown function
UHGV-0189384_34	UniRef90	UniRef90_UPI000E41EBE4	NA	NA
UHGV-0189384_34	eggNOG-mapper	1140001.I571_01142	NA	NA
UHGV-0189384_34	Pfam	PF07852	NA	DUF1642
UHGV-0189384_34	Structural annotation	PF07852	NA	NA
UHGV-0189384_36	PHROG	phrog_834	NA	unknown function
UHGV-0189384_36	UniRef90	UniRef90_A0A139P167	NA	NA
UHGV-0189384_36	eggNOG-mapper	977801.F0PIH4_9VIRU	NA	NA
UHGV-0189384_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0189384_38	UniRef90	UniRef90_A0A4D6AV39	Putative antirepressor	NA
UHGV-0189384_38	eggNOG-mapper	1123302.KB904182_gene101	BRO family, N-terminal domain	NA
UHGV-0189384_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0189384_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0189384_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0189384_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0189384_39	PHROG	phrog_3947	NA	unknown function
UHGV-0189384_40	PHROG	phrog_8736	NA	unknown function
UHGV-0189384_40	UniRef90	UniRef90_A0A098ANB9	Putative prophage protein	NA
UHGV-0189384_41	PHROG	phrog_24930	NA	unknown function
UHGV-0189384_41	UniRef90	UniRef90_A0A1I7JSM8	Single-strand DNA-binding protein	NA
UHGV-0189384_43	PHROG	phrog_4139	NA	unknown function
UHGV-0189384_43	UniRef90	UniRef90_C5WGX6	NA	NA
UHGV-0189384_43	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-0189384_44	PHROG	phrog_674	NA	unknown function
UHGV-0189384_44	UniRef90	UniRef90_UPI00117E548D	NA	NA
UHGV-0189384_44	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-0189384_44	Pfam	PF07083	NA	DUF1351
UHGV-0189384_44	Structural annotation	PF07083	NA	NA
UHGV-0189384_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189384_45	UniRef90	UniRef90_A0A4D6AY78	Single-stranded DNA-binding protein	NA
UHGV-0189384_45	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-0189384_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0189384_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0189384_46	PHROG	phrog_17539	NA	unknown function
UHGV-0189384_48	PHROG	phrog_3819	NA	unknown function
UHGV-0189384_49	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0189384_49	PHROG	phrog_19120	NA	unknown function
UHGV-0189384_49	UniRef90	UniRef90_A0A091BPY3	DnaB_2 domain-containing protein	NA
UHGV-0189384_49	eggNOG-mapper	1123301.KB904188_gene1062	DNA replication protein DnaD	NA
UHGV-0189384_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0189384_49	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0189384_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0189384_50	PHROG	phrog_3624	NA	unknown function
UHGV-0189384_51	UniRef90	UniRef90_A0A4D6AUH0	HTH cro/C1-type domain-containing protein	NA
UHGV-0189384_51	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0189384_51	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0189384_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0189384_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0189384_52	UniRef90	UniRef90_S5R104	Transcriptional regulator, Cro/CI family	NA
UHGV-0189384_52	eggNOG-mapper	365659.smi_0409	Peptidase S24-like	NA
UHGV-0189384_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189384_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0189384_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189384_52	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0189384_53	PHROG	phrog_19811	NA	unknown function
UHGV-0189384_53	eggNOG-mapper	469609.HMPREF0847_01328	NA	NA
UHGV-0189384_53	Structural annotation	PF14947	NA	NA
UHGV-0189384_54	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0189384_54	UniRef90	UniRef90_A0A091BPX9	Lipoprotein_Ltp domain-containing protein	NA
UHGV-0189384_54	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0189384_54	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0189384_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0189384_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0189384_55	UniRef90	UniRef90_UPI001BDA15EE	recombinase family protein	NA
UHGV-0189384_55	eggNOG-mapper	482234.SCAZ3_03510	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0189384_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0189384_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0189384_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0189384_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0189384_55	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA