UHGV-0189392

Genome information

Genome length 36,881 bps

CDS count 54

Completeness 86.84% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189392
vOTU ID	vOTU-029836
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595610
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length	36,881 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.07%
Average CDS length	637.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189392_1	KOfam	K14059	int; integrase	NA
UHGV-0189392_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0189392_1	UniRef90	UniRef90_A0A412FH29	Integrase	NA
UHGV-0189392_1	eggNOG-mapper	397288.C806_00112	Belongs to the 'phage' integrase family	NA
UHGV-0189392_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189392_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0189392_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0189392_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0189392_2	UniRef90	UniRef90_A0A6L6XDF6	DNA adenine methylase	NA
UHGV-0189392_2	eggNOG-mapper	1121335.Clst_0417	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0189392_2	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0189392_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0189392_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0189392_2	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0189392_3	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0189392_3	PHROG	phrog_3940	NA	unknown function
UHGV-0189392_3	UniRef90	UniRef90_A0A6L6XD43	AAA family ATPase	NA
UHGV-0189392_3	eggNOG-mapper	1150600.ADIARSV_1445	AAA ATPase domain	NA
UHGV-0189392_3	PADLOC	retron_type_I_B1_atpase_toprim_cluster22_2	NA	Retron
UHGV-0189392_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-0189392_3	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0189392_3	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0189392_3	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0189392_4	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0189392_4	PHROG	phrog_19856	NA	unknown function
UHGV-0189392_4	UniRef90	UniRef90_UPI001C01FFC4	restriction endonuclease	NA
UHGV-0189392_4	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0189392_4	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0189392_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0189392_4	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0189392_5	PHROG	phrog_87	metallo-protease	other
UHGV-0189392_5	UniRef90	UniRef90_A0A6L5YMW0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0189392_5	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0189392_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0189392_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0189392_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0189392_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189392_6	UniRef90	UniRef90_A0A1Y4FAX9	Transcriptional regulator	NA
UHGV-0189392_6	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0189392_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0189392_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0189392_7	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0189392_7	UniRef90	UniRef90_A0A6I3QFI4	XRE family transcriptional regulator	NA
UHGV-0189392_7	eggNOG-mapper	1158607.UAU_01000	Helix-turn-helix XRE-family like proteins	NA
UHGV-0189392_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189392_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0189392_8	PHROG	phrog_6058	NA	unknown function
UHGV-0189392_9	Structural annotation	PF11127	NA	NA
UHGV-0189392_11	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0189392_13	PHROG	phrog_14970	NA	unknown function
UHGV-0189392_13	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0189392_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0189392_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0189392_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0189392_14	PHROG	phrog_398	NA	unknown function
UHGV-0189392_14	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0189392_14	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0189392_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0189392_14	Structural annotation	PF16784	NA	NA
UHGV-0189392_15	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0189392_15	UniRef90	UniRef90_A0A1Q6KI77	ORF6C domain-containing protein	NA
UHGV-0189392_15	eggNOG-mapper	428127.EUBDOL_01529	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0189392_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0189392_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0189392_15	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0189392_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0189392_15	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0189392_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0189392_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189392_16	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0189392_16	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0189392_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0189392_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0189392_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0189392_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189392_17	UniRef90	UniRef90_W7BRQ0	DNA-binding protein	NA
UHGV-0189392_17	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0189392_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0189392_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0189392_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0189392_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189392_18	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0189392_18	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0189392_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0189392_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0189392_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0189392_21	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0189392_23	PHROG	phrog_8684	NA	unknown function
UHGV-0189392_23	UniRef90	UniRef90_UPI001C0135E5	YopX family protein	NA
UHGV-0189392_23	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0189392_23	Pfam	PF09643	YopX protein	YopX
UHGV-0189392_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0189392_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0189392_24	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0189392_26	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-0189392_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0189392_27	PHROG	phrog_216	integrase	integration and excision
UHGV-0189392_27	UniRef90	UniRef90_UPI000A506D75	tyrosine-type recombinase/integrase	NA
UHGV-0189392_27	eggNOG-mapper	926561.KB900618_gene172	Belongs to the 'phage' integrase family	NA
UHGV-0189392_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189392_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0189392_28	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0189392_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189392_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0189392_30	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0189392_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0189392_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0189392_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0189392_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0189392_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189392_30	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0189392_31	PHROG	phrog_1233	NA	unknown function
UHGV-0189392_31	eggNOG-mapper	665950.HMPREF1025_01361	NA	NA
UHGV-0189392_31	Structural annotation	PF13058	NA	NA
UHGV-0189392_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0189392_32	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0189392_32	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0189392_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0189392_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0189392_34	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0189392_34	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0189392_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0189392_34	Structural annotation	PF11114	NA	NA
UHGV-0189392_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0189392_35	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0189392_35	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0189392_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0189392_35	COG	COG2369	NA	NA
UHGV-0189392_35	Structural annotation	PF06152	NA	NA
UHGV-0189392_37	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0189392_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189392_37	UniRef90	UniRef90_A0A174ELV3	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0189392_37	eggNOG-mapper	665950.HMPREF1025_01508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0189392_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0189392_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189392_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189392_37	Structural annotation	PF01381, MF_00535, NF010465, COG1476	NA	NA
UHGV-0189392_38	UniRef90	UniRef90_A0A174TAQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0189392_38	eggNOG-mapper	1304866.K413DRAFT_0802	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0189392_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189392_38	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0189392_39	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0189392_39	UniRef90	UniRef90_UPI0015EBD672	Rha family transcriptional regulator	NA
UHGV-0189392_39	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0189392_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0189392_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0189392_39	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0189392_39	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0189392_41	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0189392_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-0189392_42	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0189392_42	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0189392_42	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0189392_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0189392_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0189392_43	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0189392_44	PHROG	phrog_3366	NA	unknown function
UHGV-0189392_44	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0189392_44	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0189392_45	PHROG	phrog_3266	tail completion	connector
UHGV-0189392_45	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-0189392_45	Structural annotation	PF12691	NA	NA
UHGV-0189392_46	PHROG	phrog_3099	NA	unknown function
UHGV-0189392_46	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0189392_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0189392_47	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0189392_47	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0189392_47	Pfam	PF20378	NA	DUF6673
UHGV-0189392_47	Structural annotation	PF10666	NA	NA
UHGV-0189392_48	PHROG	phrog_706	NA	unknown function
UHGV-0189392_48	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0189392_48	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0189392_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0189392_48	Structural annotation	PF06854	NA	NA
UHGV-0189392_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0189392_49	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0189392_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189392_49	Structural annotation	PF11177, PF09486, TIGR02559, COG3237, COG1842	NA	NA
UHGV-0189392_50	PHROG	phrog_1194	NA	unknown function
UHGV-0189392_50	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0189392_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0189392_51	PHROG	phrog_13879	NA	unknown function
UHGV-0189392_51	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0189392_51	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0189392_53	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0189392_53	PHROG	phrog_11157	NA	unknown function
UHGV-0189392_53	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0189392_53	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0189392_53	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0189392_53	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0189392_53	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0189392_53	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0189392_54	PHROG	phrog_18725	NA	unknown function
UHGV-0189392_54	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0189392_54	Structural annotation	PF13754, COG2372	NA	NA