UHGV-0189644

Genome information

Genome length 40,393 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189644
vOTU ID	vOTU-004188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598635
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.93
Jumbo phage	No

Genome content
Genome length	40,393 bps
GC content	46.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.87%
Average CDS length	791.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189644_1	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0189644_2	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0189644_2	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0189644_2	UniRef90	UniRef90_UPI00118473B2	helix-turn-helix transcriptional regulator	NA
UHGV-0189644_2	eggNOG-mapper	1268622.AVS7_02299	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0189644_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189644_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0189644_2	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0189644_4	UniRef90	UniRef90_A0A2J4JRR6	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0189644_4	eggNOG-mapper	526218.Sterm_3925	NA	NA
UHGV-0189644_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189644_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0189644_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0189644_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0189644_5	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-0189644_5	eggNOG-mapper	883109.HMPREF0380_00272	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0189644_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189644_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0189644_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0189644_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0189644_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0189644_8	PHROG	phrog_14556	NA	unknown function
UHGV-0189644_8	eggNOG-mapper	572547.Amico_1146	PFAM Endonuclease Exonuclease phosphatase	NA
UHGV-0189644_8	COG	COG2374	Predicted extracellular nuclease	NA
UHGV-0189644_9	KOfam	K14059	int; integrase	NA
UHGV-0189644_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0189644_9	UniRef90	UniRef90_A0A2V2E7R6	Tyr recombinase domain-containing protein	NA
UHGV-0189644_9	eggNOG-mapper	1095750.HMPREF9970_0588	Arm DNA-binding domain	NA
UHGV-0189644_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0189644_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189644_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189644_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0189644_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0189644_10	PHROG	phrog_435	endolysin	lysis
UHGV-0189644_10	UniRef90	UniRef90_UPI0018992E37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0189644_10	eggNOG-mapper	1203606.HMPREF1526_00346	Ami_3	NA
UHGV-0189644_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0189644_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0189644_10	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0189644_11	PHROG	phrog_263	holin	lysis
UHGV-0189644_11	UniRef90	UniRef90_A0A1F8V0V3	Phage holin	NA
UHGV-0189644_11	eggNOG-mapper	748224.HMPREF9436_00409	SPP1 phage holin	NA
UHGV-0189644_11	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0189644_11	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0189644_11	Structural annotation	PF04688	NA	NA
UHGV-0189644_12	PHROG	phrog_937	hemolysin	other
UHGV-0189644_14	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0189644_15	PHROG	phrog_22978	NA	unknown function
UHGV-0189644_15	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0189644_16	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0189644_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0189644_18	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0189644_18	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0189644_18	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0189644_19	PHROG	phrog_12105	NA	unknown function
UHGV-0189644_20	PHROG	phrog_15239	NA	unknown function
UHGV-0189644_21	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0189644_21	UniRef90	UniRef90_UPI00047AA53B	N4-gp56 family major capsid protein	NA
UHGV-0189644_21	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0189644_21	Pfam	PF13252	NA	DUF4043
UHGV-0189644_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0189644_21	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0189644_22	PHROG	phrog_13908	NA	unknown function
UHGV-0189644_22	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0189644_23	KOfam	K07584	NA	NA
UHGV-0189644_23	PHROG	phrog_4478	peptidase	other
UHGV-0189644_23	UniRef90	UniRef90_R5J236	Putative ribosomal protein	NA
UHGV-0189644_23	eggNOG-mapper	1105031.HMPREF1141_3106	Cysteine protease Prp	NA
UHGV-0189644_23	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0189644_23	COG	COG2868	NA	NA
UHGV-0189644_23	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0189644_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-0189644_24	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0189644_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0189644_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189644_25	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0189644_25	UniRef90	UniRef90_UPI0006875436	phage terminase large subunit	NA
UHGV-0189644_25	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0189644_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0189644_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189644_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0189644_26	PHROG	phrog_2412	NA	unknown function
UHGV-0189644_26	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0189644_26	eggNOG-mapper	226185.EF_2113	Stress-induced bacterial acidophilic repeat motif	NA
UHGV-0189644_28	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0189644_37	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0189644_37	UniRef90	UniRef90_A0A3E2X397	NA	NA
UHGV-0189644_37	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-0189644_37	Pfam	PF06048	NA	DUF927
UHGV-0189644_37	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0189644_37	COG	COG5519	NA	NA
UHGV-0189644_37	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0189644_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0189644_38	PHROG	phrog_11992	NA	unknown function
UHGV-0189644_38	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0189644_38	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0189644_38	PADLOC	drt-cluster192	DRT	DRT
UHGV-0189644_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0189644_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0189644_38	Structural annotation	PF01807	NA	NA
UHGV-0189644_39	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0189644_39	UniRef90	UniRef90_UPI000F530A03	ERCC4 domain-containing protein	NA
UHGV-0189644_39	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0189644_39	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0189644_39	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0189644_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0189644_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189644_40	UniRef90	UniRef90_A0A1K1WZF7	Single-stranded DNA-binding protein	NA
UHGV-0189644_40	eggNOG-mapper	641112.ACOK01000116_gene2637	Single-strand binding protein family	NA
UHGV-0189644_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0189644_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0189644_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189644_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0189644_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0189644_41	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189644_41	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0189644_41	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0189644_41	Pfam	PF12684	NA	DUF3799
UHGV-0189644_41	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0189644_41	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0189644_42	PHROG	phrog_21613	NA	unknown function
UHGV-0189644_42	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0189644_46	Structural annotation	PF11372	NA	NA