UHGV-0189710

Genome information

Genome length 54,903 bps

CDS count 84

Completeness 65.12% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189710
vOTU ID	vOTU-022147
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593854
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	65.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.55
Jumbo phage	No

Genome content
Genome length	54,903 bps
GC content	33.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	91.41%
Average CDS length	600.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189710_1	Structural annotation	PF14173	NA	NA
UHGV-0189710_8	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0189710_8	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0189710_8	UniRef90	UniRef90_UPI00139220C6	DNA translocase FtsK	NA
UHGV-0189710_8	eggNOG-mapper	1033810.HLPCO_000289	Ftsk_gamma	NA
UHGV-0189710_8	PADLOC	SspH_00002	SspH	SSP
UHGV-0189710_8	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0189710_8	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0189710_11	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0189710_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0189710_12	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0189710_12	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0189710_12	UniRef90	UniRef90_A0A5D0VR83	Recombinase family protein	NA
UHGV-0189710_12	eggNOG-mapper	1276756.AUEX01000023_gene2312	Resolvase helix-turn-helix domain protein	NA
UHGV-0189710_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0189710_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0189710_12	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0189710_18	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0189710_18	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0189710_18	UniRef90	UniRef90_A0A553IH27	Recombinase family protein	NA
UHGV-0189710_18	eggNOG-mapper	441768.ACL_1085	Resolvase, N terminal domain	NA
UHGV-0189710_18	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0189710_18	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0189710_19	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189710_19	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0189710_19	eggNOG-mapper	1123399.AQVE01000010_gene3222	HNH endonuclease	NA
UHGV-0189710_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0189710_23	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0189710_23	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0189710_23	UniRef90	UniRef90_UPI000C79E626	AAA family ATPase	NA
UHGV-0189710_23	eggNOG-mapper	1131462.DCF50_p1819	NA	NA
UHGV-0189710_23	Pfam	PF13481	AAA domain	AAA_25
UHGV-0189710_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0189710_23	Structural annotation	PF03796, MF_04154, NF006443, COG0305	NA	NA
UHGV-0189710_24	PHROG	phrog_16304	NA	unknown function
UHGV-0189710_24	Pfam	PF19808	NA	DUF6291
UHGV-0189710_26	Structural annotation	PF09105, MF_01804, TIGR00738, COG1386	NA	NA
UHGV-0189710_28	eggNOG-mapper	742733.HMPREF9469_00873	NA	NA
UHGV-0189710_28	Structural annotation	PF11506, MF_00984, NF006039, COG0629	NA	NA
UHGV-0189710_30	PHROG	phrog_10048	NA	unknown function
UHGV-0189710_30	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0189710_30	Structural annotation	PF06420, TIGR00607, COG5055	NA	NA
UHGV-0189710_31	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189710_31	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0189710_31	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0189710_31	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0189710_31	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0189710_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189710_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0189710_37	UniRef90	UniRef90_R7I0L3	NA	NA
UHGV-0189710_37	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0189710_37	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0189710_38	UniRef90	UniRef90_A0A6H3LKI1	XRE family transcriptional regulator	NA
UHGV-0189710_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189710_38	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0189710_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189710_39	eggNOG-mapper	1401067.HMPREF0872_00455	Peptidase S24-like	NA
UHGV-0189710_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189710_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0189710_40	KOfam	K14059	int; integrase	NA
UHGV-0189710_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0189710_40	UniRef90	UniRef90_A0A223MI02	Site-specific integrase	NA
UHGV-0189710_40	eggNOG-mapper	908340.HMPREF9406_3938	Belongs to the 'phage' integrase family	NA
UHGV-0189710_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0189710_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189710_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189710_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0189710_45	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0189710_45	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0189710_45	UniRef90	UniRef90_R6GXU6	Reverse transcriptase domain-containing protein	NA
UHGV-0189710_45	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0189710_45	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0189710_45	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0189710_45	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0189710_47	Pfam	PF19789	NA	DUF6273
UHGV-0189710_47	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0189710_47	Structural annotation	PF07210, PF19789, TIGR04183, COG2033	NA	NA
UHGV-0189710_49	eggNOG-mapper	1280689.AUJC01000011_gene1534	Collagen triple helix repeat (20 copies)	NA
UHGV-0189710_49	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0189710_52	eggNOG-mapper	1265845.PWEIH_02474	COG4886 Leucine-rich repeat (LRR) protein	NA
UHGV-0189710_52	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0189710_52	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0189710_56	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-0189710_56	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0189710_57	Structural annotation	PF06141	NA	NA
UHGV-0189710_59	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0189710_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0189710_62	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0189710_62	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0189710_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0189710_62	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0189710_63	PHROG	phrog_909	major head protein	head and packaging
UHGV-0189710_63	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0189710_63	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0189710_63	Structural annotation	PF02924	NA	NA
UHGV-0189710_65	PHROG	phrog_64	portal protein	head and packaging
UHGV-0189710_65	UniRef90	UniRef90_A0A7X7EMS9	Phage portal protein	NA
UHGV-0189710_65	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189710_65	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189710_65	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0189710_67	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0189710_67	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0189710_67	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0189710_67	COG	COG5410	NA	NA
UHGV-0189710_67	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0189710_69	UniRef90	UniRef90_A0A843H876	GIY-YIG nuclease family protein	NA
UHGV-0189710_69	eggNOG-mapper	573061.Clocel_3554	GIY-YIG catalytic domain	NA
UHGV-0189710_69	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0189710_69	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0189710_70	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0189710_70	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0189710_70	UniRef90	UniRef90_A0A7K3ZH92	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0189710_70	eggNOG-mapper	449673.BACSTE_02181	C-5 cytosine-specific DNA methylase	NA
UHGV-0189710_70	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0189710_70	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0189710_70	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0189710_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0189710_70	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0189710_71	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0189710_71	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0189710_71	UniRef90	UniRef90_A0A1V5WLT3	Methyltransferase	NA
UHGV-0189710_71	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0189710_71	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0189710_71	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0189710_71	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0189710_73	PHROG	phrog_3136	NA	unknown function
UHGV-0189710_73	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0189710_73	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0189710_73	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0189710_74	PHROG	phrog_37900	NA	unknown function
UHGV-0189710_74	UniRef90	UniRef90_H1CBW4	NA	NA
UHGV-0189710_74	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0189710_74	Pfam	PF19789	NA	DUF6273
UHGV-0189710_74	COG	COG3209	NA	NA
UHGV-0189710_74	Structural annotation	PF19789	NA	NA
UHGV-0189710_75	UniRef90	UniRef90_UPI000BA11EF5	NA	NA
UHGV-0189710_75	eggNOG-mapper	1235792.C808_00626	NA	NA
UHGV-0189710_77	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0189710_77	eggNOG-mapper	1123302.KB904167_gene507	NA	NA
UHGV-0189710_79	eggNOG-mapper	1410622.JNKY01000013_gene1458	stress, protein	NA
UHGV-0189710_79	COG	COG2310	Stress response protein SCP2	NA
UHGV-0189710_79	Structural annotation	PF02342, NF041916, COG2310	NA	NA
UHGV-0189710_82	Structural annotation	PF11717	NA	NA
UHGV-0189710_83	PHROG	phrog_7711	NA	unknown function
UHGV-0189710_83	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0189710_83	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA