UHGV-0189733

Genome information

Genome length 34,463 bps

CDS count 57

Completeness 60.45% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189733
vOTU ID	vOTU-029853
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598756
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.32
Jumbo phage	No

Genome content
Genome length	34,463 bps
GC content	36.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.56%
Average CDS length	568.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189733_2	KOfam	K14059	int; integrase	NA
UHGV-0189733_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0189733_2	UniRef90	UniRef90_A0A8D9PGQ3	Integrase	NA
UHGV-0189733_2	eggNOG-mapper	411470.RUMGNA_03934	NA	NA
UHGV-0189733_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189733_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189733_2	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0189733_3	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0189733_3	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0189733_6	PHROG	phrog_9804	NA	unknown function
UHGV-0189733_6	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0189733_6	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0189733_6	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0189733_6	Structural annotation	PF11417	NA	NA
UHGV-0189733_8	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189733_8	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0189733_8	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0189733_8	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0189733_10	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0189733_10	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0189733_10	AcrCatalog	cluster_47493	NA	NA
UHGV-0189733_10	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0189733_12	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0189733_12	UniRef90	UniRef90_R7BGS7	MT-A70	NA
UHGV-0189733_12	eggNOG-mapper	887325.HMPREF0381_0367	MT-A70	NA
UHGV-0189733_12	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0189733_12	Pfam	PF05063	MT-A70	MT-A70
UHGV-0189733_12	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0189733_12	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0189733_13	PHROG	phrog_19106	NA	unknown function
UHGV-0189733_13	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0189733_13	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0189733_13	Structural annotation	TIGR01453	NA	NA
UHGV-0189733_15	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0189733_15	eggNOG-mapper	476272.RUMHYD_01746	NA	NA
UHGV-0189733_16	PHROG	phrog_10714	NA	unknown function
UHGV-0189733_16	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0189733_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0189733_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189733_17	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0189733_17	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0189733_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0189733_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0189733_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189733_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0189733_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0189733_18	PHROG	phrog_98	NA	unknown function
UHGV-0189733_18	UniRef90	UniRef90_A0A3E4YM29	YopX domain-containing protein	NA
UHGV-0189733_18	eggNOG-mapper	1235800.C819_02639	YopX protein	NA
UHGV-0189733_18	Pfam	PF09643	YopX protein	YopX
UHGV-0189733_18	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0189733_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0189733_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189733_20	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0189733_20	Structural annotation	PF09038	NA	NA
UHGV-0189733_22	PHROG	phrog_7711	NA	unknown function
UHGV-0189733_22	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0189733_22	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0189733_23	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0189733_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0189733_23	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0189733_23	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-0189733_23	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0189733_23	dbAPIS	APIS058	NA	NA
UHGV-0189733_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0189733_23	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0189733_25	PHROG	phrog_25456	NA	unknown function
UHGV-0189733_26	KOfam	K06940	NA	NA
UHGV-0189733_26	PHROG	phrog_32498	NA	unknown function
UHGV-0189733_26	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0189733_26	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0189733_26	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0189733_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0189733_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189733_27	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0189733_27	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0189733_27	Pfam	PF03837	RecT family	RecT
UHGV-0189733_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0189733_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0189733_27	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0189733_29	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0189733_29	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189733_29	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0189733_29	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0189733_29	Pfam	PF13476	AAA domain	AAA_23
UHGV-0189733_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0189733_29	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0189733_31	PHROG	phrog_26861	NA	unknown function
UHGV-0189733_31	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0189733_31	eggNOG-mapper	511680.BUTYVIB_01841	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0189733_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0189733_31	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0189733_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189733_31	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0189733_34	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0189733_34	Structural annotation	PF10552	NA	NA
UHGV-0189733_36	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0189733_36	UniRef90	UniRef90_A0A285PXX7	ORF6C domain	NA
UHGV-0189733_36	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0189733_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0189733_36	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0189733_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0189733_36	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0189733_37	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0189733_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189733_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189733_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0189733_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189733_38	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-0189733_38	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0189733_38	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0189733_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0189733_38	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0189733_39	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0189733_41	KOfam	K07273	acm; lysozyme	NA
UHGV-0189733_41	PHROG	phrog_6745	endolysin	lysis
UHGV-0189733_41	UniRef90	UniRef90_A0A7U9NG87	Autolytic lysozyme	NA
UHGV-0189733_41	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0189733_41	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0189733_41	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0189733_41	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0189733_43	PHROG	phrog_6616	tail protein	tail
UHGV-0189733_43	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0189733_43	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0189733_43	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0189733_43	COG	COG4926	Phage-related protein	NA
UHGV-0189733_43	Structural annotation	PF05113, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-0189733_44	PHROG	phrog_1401	NA	unknown function
UHGV-0189733_44	Structural annotation	PF07761	NA	NA
UHGV-0189733_46	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0189733_47	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0189733_47	eggNOG-mapper	1234679.BN424_1434	NA	NA
UHGV-0189733_47	Pfam	PF16729	NA	DUF5067
UHGV-0189733_47	Structural annotation	PF16729, TIGR04087, COG3353	NA	NA
UHGV-0189733_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0189733_48	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-0189733_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189733_49	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189733_49	UniRef90	UniRef90_UPI000CF201CD	GIY-YIG nuclease family protein	NA
UHGV-0189733_49	eggNOG-mapper	1126950.G9J202_9CAUD	nucleic acid binding	NA
UHGV-0189733_49	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0189733_49	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0189733_49	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0189733_49	Structural annotation	PF19835, TIGR01453, COG2827	NA	NA
UHGV-0189733_50	PHROG	phrog_28918	NA	unknown function
UHGV-0189733_50	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0189733_50	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0189733_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189733_50	Structural annotation	PF20155	NA	NA
UHGV-0189733_52	PHROG	phrog_36112	NA	unknown function
UHGV-0189733_52	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0189733_52	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0189733_52	Structural annotation	PF16478	NA	NA
UHGV-0189733_53	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0189733_53	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0189733_54	Structural annotation	PF05657	NA	NA
UHGV-0189733_55	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0189733_55	AcrCatalog	cluster_24841	NA	NA
UHGV-0189733_56	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0189733_56	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0189733_57	PHROG	phrog_1129	holin	lysis
UHGV-0189733_57	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0189733_57	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0189733_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2