UHGV-0189814

Genome information

Genome length 30,468 bps

CDS count 50

Completeness 72.10% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189814
vOTU ID	vOTU-029859
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594203
BioSample	SAMN09781758
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.87
Jumbo phage	No

Genome content
Genome length	30,468 bps
GC content	55.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.79%
Average CDS length	563.16 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189814_3	PHROG	phrog_15303	NA	unknown function
UHGV-0189814_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0189814_5	PHROG	phrog_291	endolysin	lysis
UHGV-0189814_5	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0189814_5	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0189814_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0189814_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0189814_5	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0189814_6	PHROG	phrog_1382	NA	unknown function
UHGV-0189814_8	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0189814_9	UniRef90	UniRef90_A0A412ZBV2	MtfA protein	NA
UHGV-0189814_9	eggNOG-mapper	1120933.ATUY01000004_gene1010	NA	NA
UHGV-0189814_9	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0189814_12	PHROG	phrog_3558	tail protein	tail
UHGV-0189814_12	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0189814_12	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0189814_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0189814_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0189814_12	COG	COG4926	Phage-related protein	NA
UHGV-0189814_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0189814_13	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0189814_13	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0189814_13	eggNOG-mapper	663278.Ethha_0487	Phage tail tape measure protein, TP901 family	NA
UHGV-0189814_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0189814_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0189814_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0189814_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0189814_16	PHROG	phrog_885	major tail protein	tail
UHGV-0189814_16	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0189814_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0189814_17	Structural annotation	PF13554	NA	NA
UHGV-0189814_18	PHROG	phrog_17977	NA	unknown function
UHGV-0189814_18	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0189814_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0189814_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0189814_20	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0189814_20	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0189814_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0189814_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0189814_23	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0189814_23	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0189814_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0189814_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0189814_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0189814_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0189814_24	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0189814_24	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0189814_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0189814_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0189814_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0189814_24	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0189814_26	Structural annotation	PF07342	NA	NA
UHGV-0189814_27	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0189814_27	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0189814_27	UniRef90	UniRef90_UPI001D0E8318	helix-turn-helix transcriptional regulator	NA
UHGV-0189814_27	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0189814_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189814_27	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0189814_27	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0189814_28	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0189814_28	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0189814_28	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0189814_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0189814_28	COG	COG2369	NA	NA
UHGV-0189814_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0189814_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0189814_29	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0189814_29	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189814_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189814_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0189814_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189814_30	PHROG	phrog_10250	NA	unknown function
UHGV-0189814_30	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0189814_30	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0189814_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0189814_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0189814_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189814_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189814_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0189814_31	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0189814_31	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0189814_31	Structural annotation	PF04218	NA	NA
UHGV-0189814_32	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0189814_32	Structural annotation	PF07374	NA	NA
UHGV-0189814_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0189814_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189814_34	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0189814_34	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0189814_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0189814_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0189814_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0189814_39	Structural annotation	PF11417	NA	NA
UHGV-0189814_40	PHROG	phrog_15768	NA	unknown function
UHGV-0189814_40	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0189814_40	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0189814_40	Pfam	PF19808	NA	DUF6291
UHGV-0189814_40	Structural annotation	PF19808	NA	NA
UHGV-0189814_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0189814_41	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0189814_41	eggNOG-mapper	1150599.MPHLEI_23354	Single-stranded DNA-binding protein	NA
UHGV-0189814_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189814_41	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0189814_42	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189814_42	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0189814_42	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0189814_42	Pfam	PF03837	RecT family	RecT
UHGV-0189814_42	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0189814_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0189814_42	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0189814_43	PHROG	phrog_674	NA	unknown function
UHGV-0189814_43	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0189814_43	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-0189814_43	Pfam	PF07083	NA	DUF1351
UHGV-0189814_43	Structural annotation	PF07083	NA	NA
UHGV-0189814_44	Structural annotation	PF14120	NA	NA
UHGV-0189814_46	Structural annotation	PF09537	NA	NA
UHGV-0189814_47	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0189814_48	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0189814_50	PHROG	phrog_27197	NA	unknown function
UHGV-0189814_50	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0189814_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0189814_50	Structural annotation	NF007410	NA	NA