UHGV-0189846

Genome information

Genome length 27,182 bps

CDS count 39

Completeness 53.67% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189846
vOTU ID	vOTU-029862
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595875
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.69
Jumbo phage	No

Genome content
Genome length	27,182 bps
GC content	33.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.41%
Average CDS length	653.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189846_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189846_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0189846_3	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0189846_3	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0189846_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0189846_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0189846_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189846_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189846_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0189846_5	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0189846_5	Structural annotation	PF19714	NA	NA
UHGV-0189846_6	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0189846_10	UniRef90	UniRef90_A0A1I1KM36	Pectate lyase superfamily protein	NA
UHGV-0189846_10	Pfam	PF12218	N terminal extension of bacteriophage endosialidase	End_N_terminal
UHGV-0189846_12	PHROG	phrog_1863	NA	unknown function
UHGV-0189846_12	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0189846_13	PHROG	phrog_443	holin	lysis
UHGV-0189846_13	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0189846_13	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0189846_13	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0189846_13	Structural annotation	PF16945	NA	NA
UHGV-0189846_14	PHROG	phrog_2649	endolysin	lysis
UHGV-0189846_14	UniRef90	UniRef90_UPI001D091A6B	peptidoglycan-binding protein	NA
UHGV-0189846_14	eggNOG-mapper	646529.Desaci_4658	Cell wall hydrolase	NA
UHGV-0189846_14	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0189846_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0189846_14	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0189846_14	Structural annotation	PF03412, PF01471, COG3271	NA	NA
UHGV-0189846_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0189846_15	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0189846_15	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0189846_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189846_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0189846_16	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0189846_16	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0189846_16	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-0189846_18	PHROG	phrog_1315	NA	unknown function
UHGV-0189846_18	Structural annotation	TIGR00310	NA	NA
UHGV-0189846_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0189846_19	Structural annotation	MF_02110	NA	NA
UHGV-0189846_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-0189846_20	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0189846_20	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0189846_20	Structural annotation	PF02924	NA	NA
UHGV-0189846_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0189846_21	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0189846_21	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0189846_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0189846_21	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0189846_23	PHROG	phrog_4020	NA	unknown function
UHGV-0189846_23	eggNOG-mapper	1443122.Z958_05850	NA	NA
UHGV-0189846_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0189846_25	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0189846_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0189846_26	PHROG	phrog_7585	NA	unknown function
UHGV-0189846_26	eggNOG-mapper	748727.CLJU_c31260	NA	NA
UHGV-0189846_26	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0189846_27	PHROG	phrog_6686	tail tube protein	tail
UHGV-0189846_27	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0189846_27	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0189846_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0189846_28	PHROG	phrog_6280	NA	unknown function
UHGV-0189846_28	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0189846_28	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0189846_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0189846_29	UniRef90	UniRef90_A0A3D1WP41	Phage tail tape measure protein (Fragment)	NA
UHGV-0189846_29	eggNOG-mapper	411460.RUMTOR_00482	Phage tail tape measure protein, TP901 family	NA
UHGV-0189846_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0189846_29	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0189846_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0189846_29	COG	COG5283	Phage-related tail protein	NA
UHGV-0189846_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0189846_30	PHROG	phrog_36410	NA	unknown function
UHGV-0189846_30	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0189846_30	eggNOG-mapper	1410653.JHVC01000011_gene994	Phage tail protein	NA
UHGV-0189846_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0189846_30	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0189846_31	PHROG	phrog_538	minor tail protein	tail
UHGV-0189846_31	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0189846_31	eggNOG-mapper	1497679.EP56_02980	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0189846_31	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0189846_32	PHROG	phrog_1220	head protein	head and packaging
UHGV-0189846_32	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0189846_32	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0189846_32	Structural annotation	PF20747	NA	NA
UHGV-0189846_33	eggNOG-mapper	441768.ACL_1079	cell wall organization	NA
UHGV-0189846_33	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0189846_33	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0189846_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0189846_34	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0189846_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0189846_37	PHROG	phrog_16490	NA	unknown function
UHGV-0189846_37	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0189846_38	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0189846_39	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA