UHGV-0189864

Genome information

Genome length 42,796 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189864
vOTU ID	vOTU-006180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596572
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.46
Jumbo phage	No

Genome content
Genome length	42,796 bps
GC content	45.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	91.04%
Average CDS length	508.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189864_1	UniRef90	UniRef90_UPI001D064D4E	NA	NA
UHGV-0189864_1	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0189864_2	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0189864_2	UniRef90	UniRef90_A0A1C7GBP2	Methyltransferase	NA
UHGV-0189864_2	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0189864_2	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0189864_2	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0189864_2	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0189864_2	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0189864_3	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189864_3	UniRef90	UniRef90_R6E210	ASCH domain protein	NA
UHGV-0189864_3	eggNOG-mapper	1499683.CCFF01000005_gene42	NA	NA
UHGV-0189864_3	Pfam	PF12961	NA	DUF3850
UHGV-0189864_3	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0189864_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0189864_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0189864_7	UniRef90	UniRef90_A0A1C5QCL2	Single-stranded DNA-binding protein	NA
UHGV-0189864_7	eggNOG-mapper	1161902.HMPREF0378_1713	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0189864_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0189864_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0189864_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0189864_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0189864_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0189864_8	PHROG	phrog_1374	NA	unknown function
UHGV-0189864_8	eggNOG-mapper	1203606.HMPREF1526_01891	NA	NA
UHGV-0189864_8	Structural annotation	TIGR04438	NA	NA
UHGV-0189864_10	PHROG	phrog_27197	NA	unknown function
UHGV-0189864_10	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0189864_10	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0189864_11	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0189864_11	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0189864_11	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0189864_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0189864_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0189864_12	UniRef90	UniRef90_A0A1C6JYC1	Replicative DNA helicase	NA
UHGV-0189864_12	eggNOG-mapper	697281.Mahau_0555	DnaB-like helicase N terminal domain	NA
UHGV-0189864_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0189864_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0189864_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0189864_13	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0189864_13	UniRef90	UniRef90_A0A229UNW4	Inhibitor_G39P domain-containing protein	NA
UHGV-0189864_13	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0189864_13	Structural annotation	PF11417	NA	NA
UHGV-0189864_14	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0189864_14	UniRef90	UniRef90_A0A318EQP1	Putative phage protein (TIGR02220 family)	NA
UHGV-0189864_14	eggNOG-mapper	588581.Cpap_1481	DnaD domain protein	NA
UHGV-0189864_14	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0189864_14	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0189864_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0189864_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0189864_15	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0189864_15	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0189864_15	Structural annotation	PF05772	NA	NA
UHGV-0189864_16	PHROG	phrog_7566	NA	unknown function
UHGV-0189864_16	UniRef90	UniRef90_A0A3D5LSW4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0189864_16	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0189864_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0189864_18	PHROG	phrog_6244	NA	unknown function
UHGV-0189864_18	UniRef90	UniRef90_A0A7W3XTD8	Chromosome segregation ATPase	NA
UHGV-0189864_18	eggNOG-mapper	562981.HMPREF0428_01006	NA	NA
UHGV-0189864_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189864_19	UniRef90	UniRef90_A0A1C5T8N6	ERF superfamily	NA
UHGV-0189864_19	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0189864_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0189864_19	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0189864_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189864_27	UniRef90	UniRef90_A0A417Z818	XRE family transcriptional regulator	NA
UHGV-0189864_27	eggNOG-mapper	1195236.CTER_4410	Helix-turn-helix XRE-family like proteins	NA
UHGV-0189864_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0189864_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189864_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0189864_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0189864_28	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0189864_28	eggNOG-mapper	642492.Clole_1825	sequence-specific DNA binding	NA
UHGV-0189864_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189864_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0189864_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0189864_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0189864_31	UniRef90	UniRef90_UPI001C11D960	recombinase family protein	NA
UHGV-0189864_31	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0189864_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0189864_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0189864_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0189864_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0189864_31	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0189864_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0189864_34	PHROG	phrog_16490	NA	unknown function
UHGV-0189864_34	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0189864_35	Structural annotation	NF033819	NA	NA
UHGV-0189864_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0189864_36	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0189864_36	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0189864_36	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0189864_37	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0189864_37	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0189864_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0189864_40	PHROG	phrog_3088	amidase	lysis
UHGV-0189864_40	UniRef90	UniRef90_UPI001D122971	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0189864_40	eggNOG-mapper	1285586.H131_11833	Ami_2	NA
UHGV-0189864_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0189864_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0189864_40	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0189864_40	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0189864_41	PHROG	phrog_263	holin	lysis
UHGV-0189864_41	UniRef90	UniRef90_UPI0015A56FE5	phage holin	NA
UHGV-0189864_41	eggNOG-mapper	1178540.BA70_00275	SPP1 phage holin	NA
UHGV-0189864_41	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0189864_42	PHROG	phrog_2310	NA	unknown function
UHGV-0189864_44	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-0189864_44	COG	COG4926	Phage-related protein	NA
UHGV-0189864_45	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0189864_45	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0189864_45	eggNOG-mapper	1123508.JH636444_gene5347	NA	NA
UHGV-0189864_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0189864_46	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0189864_46	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0189864_46	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0189864_47	Structural annotation	PF20387	NA	NA
UHGV-0189864_50	PHROG	phrog_267	major head protein	head and packaging
UHGV-0189864_50	UniRef90	UniRef90_A0A4R3KBP0	N4-gp56 family major capsid protein	NA
UHGV-0189864_50	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0189864_50	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0189864_53	PHROG	phrog_156	portal protein	head and packaging
UHGV-0189864_53	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0189864_53	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0189864_55	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0189864_55	UniRef90	UniRef90_A0A6N9QEJ3	Terminase	NA
UHGV-0189864_55	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0189864_55	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0189864_55	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0189864_55	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0189864_55	COG	COG5362	Phage terminase large subunit	NA
UHGV-0189864_55	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0189864_56	PHROG	phrog_1233	NA	unknown function
UHGV-0189864_56	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0189864_56	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0189864_58	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0189864_67	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0189864_70	PHROG	phrog_474	phosphofructokinase	other
UHGV-0189864_70	UniRef90	UniRef90_A0A316NLA2	NA	NA
UHGV-0189864_70	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0189864_70	Pfam	PF19905	NA	DUF6378
UHGV-0189864_70	Structural annotation	PF19905	NA	NA
UHGV-0189864_71	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0189864_71	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0189864_71	eggNOG-mapper	1179226.AJXO01000025_gene167	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0189864_71	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0189864_71	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0189864_71	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0189864_73	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0189864_73	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0189864_73	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0189864_74	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0189864_74	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189864_74	UniRef90	UniRef90_UPI000C7C6540	HNH endonuclease	NA
UHGV-0189864_74	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0189864_74	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0189864_74	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0189864_74	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0189864_77	PHROG	phrog_21026	NA	unknown function