UHGV-0189906

Genome information

Genome length 41,926 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0189906
vOTU ID	vOTU-011053
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598828
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.81
Jumbo phage	No

Genome content
Genome length	41,926 bps
GC content	60.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.84%
Average CDS length	640.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0189906_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0189906_2	PHROG	phrog_894	endolysin	lysis
UHGV-0189906_2	UniRef90	UniRef90_A0A329UAI1	Peptidase M15	NA
UHGV-0189906_2	eggNOG-mapper	657322.FPR_13570	Peptidase M15A	NA
UHGV-0189906_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0189906_2	COG	COG3108	NA	NA
UHGV-0189906_2	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0189906_3	PHROG	phrog_2310	NA	unknown function
UHGV-0189906_4	PHROG	phrog_29248	NA	unknown function
UHGV-0189906_4	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0189906_5	eggNOG-mapper	657322.FPR_21920	NA	NA
UHGV-0189906_5	COG	COG5563	NA	NA
UHGV-0189906_6	PHROG	phrog_23587	NA	unknown function
UHGV-0189906_7	PHROG	phrog_38190	NA	unknown function
UHGV-0189906_7	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0189906_8	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0189906_9	PHROG	phrog_9534	head protein	head and packaging
UHGV-0189906_9	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0189906_9	Structural annotation	PF21567	NA	NA
UHGV-0189906_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0189906_10	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0189906_10	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0189906_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0189906_11	PHROG	phrog_36410	NA	unknown function
UHGV-0189906_11	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0189906_11	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0189906_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0189906_12	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0189906_12	UniRef90	UniRef90_A0A316RYK9	Phage tail tape measure protein	NA
UHGV-0189906_12	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-0189906_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0189906_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0189906_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0189906_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0189906_13	PHROG	phrog_706	NA	unknown function
UHGV-0189906_13	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0189906_13	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0189906_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0189906_13	Structural annotation	PF06854	NA	NA
UHGV-0189906_14	PHROG	phrog_4450	NA	unknown function
UHGV-0189906_14	Structural annotation	PF20378	NA	NA
UHGV-0189906_15	PHROG	phrog_820	major tail protein	tail
UHGV-0189906_15	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0189906_15	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0189906_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0189906_16	PHROG	phrog_3266	tail completion	connector
UHGV-0189906_16	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0189906_16	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0189906_16	Structural annotation	PF12691	NA	NA
UHGV-0189906_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0189906_17	UniRef90	UniRef90_A0A3C0QTS8	Capsid protein	NA
UHGV-0189906_17	eggNOG-mapper	641112.ACOK01000073_gene2898	Minor capsid protein	NA
UHGV-0189906_17	Structural annotation	PF11114	NA	NA
UHGV-0189906_18	Structural annotation	PF20536	NA	NA
UHGV-0189906_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-0189906_20	UniRef90	UniRef90_A0A352IHQ9	Coat protein	NA
UHGV-0189906_20	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0189906_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0189906_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0189906_21	UniRef90	UniRef90_A0A8J6IQD2	Phage scaffolding protein	NA
UHGV-0189906_21	eggNOG-mapper	1449050.JNLE01000003_gene3890	Phage minor structural protein GP20	NA
UHGV-0189906_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0189906_21	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0189906_22	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0189906_22	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0189906_31	PHROG	phrog_4709	NA	unknown function
UHGV-0189906_31	eggNOG-mapper	509191.AEDB02000020_gene3264	NA	NA
UHGV-0189906_31	AcrCatalog	cluster_3300	NA	NA
UHGV-0189906_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0189906_32	UniRef90	UniRef90_R6NCU9	Minor capsid 2 protein	NA
UHGV-0189906_32	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0189906_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0189906_32	COG	COG2369	NA	NA
UHGV-0189906_32	Structural annotation	PF06152	NA	NA
UHGV-0189906_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0189906_34	UniRef90	UniRef90_A0A3E2XD02	Phage portal protein	NA
UHGV-0189906_34	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-0189906_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0189906_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0189906_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0189906_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0189906_35	UniRef90	UniRef90_A0A3E2XCJ2	PBSX family phage terminase large subunit	NA
UHGV-0189906_35	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0189906_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0189906_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0189906_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0189906_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0189906_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0189906_36	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0189906_36	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0189906_36	UniRef90	UniRef90_A0A3E2XCB9	Methyltransferase	NA
UHGV-0189906_36	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0189906_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0189906_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0189906_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0189906_36	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0189906_40	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-0189906_41	PHROG	phrog_8680	NA	unknown function
UHGV-0189906_41	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0189906_41	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-0189906_41	Pfam	PF14386	NA	DUF4417
UHGV-0189906_41	Structural annotation	PF14386, NF041059	NA	NA
UHGV-0189906_42	Structural annotation	PF07374	NA	NA
UHGV-0189906_43	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0189906_43	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0189906_43	UniRef90	UniRef90_A0A3E2XB72	DEAD/DEAH box helicase	NA
UHGV-0189906_43	eggNOG-mapper	693746.OBV_43130	snf2 family	NA
UHGV-0189906_43	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0189906_43	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0189906_43	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0189906_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0189906_43	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0189906_44	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189906_44	UniRef90	UniRef90_UPI001A9B532E	VRR-NUC domain-containing protein	NA
UHGV-0189906_44	eggNOG-mapper	411473.RUMCAL_00894	VRR_NUC	NA
UHGV-0189906_44	Structural annotation	PF01870, COG1637	NA	NA
UHGV-0189906_45	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0189906_45	UniRef90	UniRef90_A0A3E2XCJ5	Virulence-associated protein E	NA
UHGV-0189906_45	eggNOG-mapper	1117108.PAALTS15_09960	virulence-associated E family protein	NA
UHGV-0189906_45	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0189906_45	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0189906_45	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0189906_46	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0189906_47	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0189906_47	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0189906_47	UniRef90	UniRef90_A0A3E2XCZ3	POLAc domain-containing protein	NA
UHGV-0189906_47	eggNOG-mapper	1408437.JNJN01000045_gene604	DNA polymerase	NA
UHGV-0189906_47	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0189906_47	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0189906_47	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0189906_48	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0189906_48	UniRef90	UniRef90_A0A3E2XCH4	NA	NA
UHGV-0189906_48	eggNOG-mapper	397288.C806_00737	NA	NA
UHGV-0189906_48	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0189906_48	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0189906_49	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0189906_49	UniRef90	UniRef90_A0A3E2XB65	NA	NA
UHGV-0189906_49	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-0189906_49	Pfam	PF10926	NA	DUF2800
UHGV-0189906_49	COG	COG2887	RecB family exonuclease	NA
UHGV-0189906_49	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0189906_50	PHROG	phrog_408	NA	unknown function
UHGV-0189906_51	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0189906_51	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0189906_54	PHROG	phrog_37789	NA	unknown function
UHGV-0189906_56	UniRef90	UniRef90_A0A316SCA5	HTH cro/C1-type domain-containing protein	NA
UHGV-0189906_56	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0189906_57	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0189906_57	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0189906_57	UniRef90	UniRef90_A0A316S054	Transcriptional regulator	NA
UHGV-0189906_57	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0189906_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0189906_57	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0189906_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0189906_57	Structural annotation	PF00717, PF01381, MF_00015, MF_00535, TIGR00498, NF041951, COG1974	NA	NA
UHGV-0189906_58	KOfam	K14059	int; integrase	NA
UHGV-0189906_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0189906_58	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0189906_58	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0189906_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0189906_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0189906_58	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0189906_59	eggNOG-mapper	657322.FPR_28970	diguanylate cyclase	NA
UHGV-0189906_59	COG	COG2199	GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants	NA